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Report for Sequence Feature Glyma.08g122600

Feature Type:gene_model
Chromosome:Gm08
Start:9445153
stop:9450502
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g122600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G04420.1AT NAD(P)-linked oxidoreductase superfamily protein JGI N/AIEA
KOG1575 KOG Voltage-gated shaker-like K+ channel, subunit beta/KCNAB JGI N/AIEA
PTHR11732Panther ALDO/KETO REDUCTASE JGI N/AIEA
PTHR11732:SF115Panther JGI N/AIEA
PF00248PFAM Aldo/keto reductase family JGI N/AIEA
GN7V-56592SoyCyc9-rxn dTDP-(2R,6S)-6-hydroxy-2-methyl-3-oxo-3,6-dihydro-2H-pyran-4-olate 3-ketoreductase (dTDP-4-dehydro-2,6-dideoxy-α-D-allose-forming) Plant Metabolic Network ISS

Expression Patterns of Glyma.08g122600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g122600
ParalogEvidenceComments
Glyma.05g165200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g122600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g12930 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g122600
>Glyma.08g122600.1 sequence-type=CDS polypeptide=Glyma.08g122600.1.p locus=Glyma.08g122600 ID=Glyma.08g122600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAGGTGTTCCTCTCTTCAACCTGGCTCCTAATCTCACAGTGTCGAGGCTCTGCTTAGGAAGCATGAGTTTCGGGGAGCAGAACACGCTGGCGGAGTCGTTCCAGCTTATGGACCAAGCCTTCCATGCCGGCATCAACTTCTTCGACTCCGCCGAAATGTATCCCGTGCCTCAGCGCGCTCACACGTGCGGCAGGAGCGAAGAGTGTCTCGGCCGTTGGATTTCTCAACGAAAAATCCCCAGGGATAGCCTCGTAATTGCCACTAAGGTTGCTGGACCTTCTGGGCAGATGACTTGGATTAGAGGGGGTCCTAAATGTTTGGATGCCGCTAATATTACTGAAGCCATTGATAATAGTTTGTTGCGGATGCAAATGGATTATATTGATCTTTATCAAATTCATTGGCCTGATCGTTATGTTCCAATGTTTGGAGAAACTGAGTATGACCCAGTCCAACAATATGCTTCAATCAGTATAGATGAACAACTTGAAGCTCTCAGTGCAGCTGTGAAAGCTGGGAAGATCAGATATGTTGGTCTTAGTAATGAAACACCTTATGGCTTGATGAAGTTTATTCAGGTTGCTGAAAAATATGCTTCACACCTGAAGATAGTATCTCTGCAGAATTCATATAGCCTGCTATGTAGAACTTTTGATTCTGCAATGGCCGAATGCTGCCATCAGGAGAGTATTAGCTTGTTGGCCTACAGTCCCCTGGCAATGGGTATACTTTCAGGGAAATATTTTTCTCCAGGCGGTGGTCCAACAGAAGCTCGTTTAAATCTGTTTAAAGGGAAGTATTCAGAAGGAGAATCTAGGTACAACTTGTCCAAGAAAATTATAAAGGCTGCTACCATGGAATACCTTGATATTGCAAAAACATATGGTCTTCATCCTGTATCTCTGGCTATAGCTTTTGTTTTGCGACACCCCCTTGTCGCTAGTGCTGTTTTTGGGGCTACCAAATCATGGCAGCTTCAGGAGGTTCTAAATGCATGCAAGATCGAGCTCGCATCTGAAGTAATTGAAGATATTAACAAGATTCATTTAAGGTTTCCAAATCCATGCCCCTGA
Predicted protein sequences of Glyma.08g122600
>Glyma.08g122600.1.p sequence-type=predicted peptide transcript=Glyma.08g122600.1 locus=Glyma.08g122600 ID=Glyma.08g122600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSGVPLFNLAPNLTVSRLCLGSMSFGEQNTLAESFQLMDQAFHAGINFFDSAEMYPVPQRAHTCGRSEECLGRWISQRKIPRDSLVIATKVAGPSGQMTWIRGGPKCLDAANITEAIDNSLLRMQMDYIDLYQIHWPDRYVPMFGETEYDPVQQYASISIDEQLEALSAAVKAGKIRYVGLSNETPYGLMKFIQVAEKYASHLKIVSLQNSYSLLCRTFDSAMAECCHQESISLLAYSPLAMGILSGKYFSPGGGPTEARLNLFKGKYSEGESRYNLSKKIIKAATMEYLDIAKTYGLHPVSLAIAFVLRHPLVASAVFGATKSWQLQEVLNACKIELASEVIEDINKIHLRFPNPCP*






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