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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G46420.1 | AT | 16S rRNA processing protein RimM family | JGI | N/A | IEA |
| GO:0006048 | GO-bp | UDP-N-acetylglucosamine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0006364 | GO-bp | rRNA processing | EnsemblGenomes | N/A | IEA |
| GO:0006364 | GO-bp | rRNA processing | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0005840 | GO-cc | ribosome | EnsemblGenomes | N/A | IEA |
| GO:0003977 | GO-mf | UDP-N-acetylglucosamine diphosphorylase activity | EnsemblGenomes | N/A | IEA |
| GO:0016779 | GO-mf | nucleotidyltransferase activity | JGI | N/A | IEA |
| GO:0043022 | GO-mf | ribosome binding | EnsemblGenomes | N/A | IEA |
| GO:0070569 | GO-mf | uridylyltransferase activity | EnsemblGenomes | N/A | IEA |
| KOG2388 | KOG | UDP-N-acetylglucosamine pyrophosphorylase | JGI | N/A | IEA |
| PTHR11952 | Panther | UDP- GLUCOSE PYROPHOSPHORYLASE | JGI | N/A | IEA |
| PF01704 | PFAM | UTP--glucose-1-phosphate uridylyltransferase | JGI | N/A | IEA |
| PF01782 | PFAM | RimM N-terminal domain | JGI | N/A | IEA |
| PF05239 | PFAM | PRC-barrel domain | JGI | N/A | IEA |
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Glyma.08g121900 not represented in the dataset |
Glyma.08g121900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.05g164500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g12850 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g121900.1 sequence-type=CDS polypeptide=Glyma.08g121900.1.p locus=Glyma.08g121900 ID=Glyma.08g121900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCAGATAGAGGCACTGCCCCCGGCTCTCCAACGCCCGTTTCAGCCTCCACTTTCTCTTGGATTCCCTTTCAAACCTTCTTTTTTAACTCCAGCCACACACGCCCCTTCGCACTTCAATACATATTCACGTTTTCAGCATTCAGTTAAGTTTCGTCGCTCTTTTGCAACGGTTACAGCGACCACCGAGAAGGTTGTTATTGACGACAGCGACACCACCAACGACGAACCGGGCTTCGTTAACATTGGCTACATATCGAGTGTTCATGGAATTCAGGGCGAGATTCGCGTCAAGCCAGCCACCGATTTTCCTCAACTGCGCTTTTCCACTCCTGGAAGAAGATGGTTGAAGAGCAAGGTTTTGGGTAGAGAAAGTGTTCAAGAAGTTGAGCTGGAGGAAGGTAGAGAGCACCCTGCACTTAAGAGTTGGATACTCAAATTCAGAGGAATTGACACAGTGGACCAGGCTAAGAAGCTTATTGGTGCTACCTTGCTCGTGGTGGATGAAGACAGGCCGGAATTAGAGGAGGGTGAATTTTACACACATGATCTGATAGGGATGAAAGTTTTTATGAAGGAAAATGGAAAACTTGTGGGAACTGTCATGAATGTTTTCAATAGTGGAGCCAATGACCTACTACAAATTGTACTTGATTCATCTTTTGATATGCTTGACAAAAGTGGCAAGTCAAGGTCAGCAGAAATAGATGCATCTGATCAGCTTGTTTTGGTACCTTTTGTTGAAGCCATTGTTCCAGATGTTGATATGAAAAGAAGACAAATGCATATTACTCCGCCCAAGGGACTCCTGGAATTAAATTTACGATTTGATGATAGGTCCAAAAAAGAAAGGCGCCAACTTGAATGGAAAGAAAAGAAAAAGTTTCAAAAGCGTCTCATAGCAGCAAAAAAGAAACTCATTGAAATGGAGCAAAAACACATATTTCATGGATTTCAATATGGTGAGAAAGATCAATGGAGCTCGCTTAGTGATCAGATTGTTGGTGTAAATTCCAAATTGCTCCAGGAGGCTTTACAAAGTCTTGAGCGGCCAGCAAAGAGATGGAAAGTTGCTGAGTTGGTCGGTGCCATAGAAGCAAAGCTTATAAATTCTATCCAAATATCAGAGGAATATTTTTTAAATGGAGGTAAAAATAAGTTGTTTAGAGATATGCAAGAGAAGGGACTTGAGCTCATGTCTAAGGGGAAAATGGCTATTGTCTTTCTCTTGAATGACAAAGAGCATCAGGGGAGCATTTCTGACTCTAACAAGGTTGAAAATGAAGCAATTGACACTTCGGTACTTCACATGTTTCAAAAGGTCAAAGATCATGTTTCTGTGCCTTTAATTTTGGTTTCCTCAGCCCAACAAATTCAGTCTTTTAGGAATCTGTTTACAAGCAACAATTACTTCGCATTTGACTCTGAAAAGGTATGGTTTTTGGAGGAAGAGAAGCTGCCAGTAATTAGCAGTTTGCCCAAGGGACAGAACAAATATAAGATTTTAATGAAATCACCTTGGGAAATACTCCAATCTCCAGTTGGATCTGGGGGACTTATTAGCTTGTTTTCAAACCATAGTATTGCAGATAATCTTATTGACATGGGTGTTGAGTACATTGAGGTTTGCTGCACAAGTGAAAAAATGGCCGGTGGAAACTCTCTACTTCTTGGGTTGATTAATTCACGGGAAGCCAAGATTGGGATACAAATTTCGCCTAAAATCACTGATTCGGAAGAAAACTTTGACTTGATATTCTCGATGGACTTTGTAAAGAAGTTAACGAAGCAAAGCAACAAACTCCAATTTGATGCAATCCCAAAGGCACATTCCTTTGTTGAGAAAGTTGACAAAGAATGGGTTACTCTCACCTCGTCCACCCCCAATTCATATGAGCTCTCTTGTAGCATATATAGTTCCTTAAACGCATGTTCGTTGGATAAGGTTTGTATAGTGGAGGTTAGAGAATAA
>Glyma.08g121900.1.p sequence-type=predicted peptide transcript=Glyma.08g121900.1 locus=Glyma.08g121900 ID=Glyma.08g121900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MQIEALPPALQRPFQPPLSLGFPFKPSFLTPATHAPSHFNTYSRFQHSVKFRRSFATVTATTEKVVIDDSDTTNDEPGFVNIGYISSVHGIQGEIRVKPATDFPQLRFSTPGRRWLKSKVLGRESVQEVELEEGREHPALKSWILKFRGIDTVDQAKKLIGATLLVVDEDRPELEEGEFYTHDLIGMKVFMKENGKLVGTVMNVFNSGANDLLQIVLDSSFDMLDKSGKSRSAEIDASDQLVLVPFVEAIVPDVDMKRRQMHITPPKGLLELNLRFDDRSKKERRQLEWKEKKKFQKRLIAAKKKLIEMEQKHIFHGFQYGEKDQWSSLSDQIVGVNSKLLQEALQSLERPAKRWKVAELVGAIEAKLINSIQISEEYFLNGGKNKLFRDMQEKGLELMSKGKMAIVFLLNDKEHQGSISDSNKVENEAIDTSVLHMFQKVKDHVSVPLILVSSAQQIQSFRNLFTSNNYFAFDSEKVWFLEEEKLPVISSLPKGQNKYKILMKSPWEILQSPVGSGGLISLFSNHSIADNLIDMGVEYIEVCCTSEKMAGGNSLLLGLINSREAKIGIQISPKITDSEENFDLIFSMDFVKKLTKQSNKLQFDAIPKAHSFVEKVDKEWVTLTSSTPNSYELSCSIYSSLNACSLDKVCIVEVRE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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