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Report for Sequence Feature Glyma.08g117600

Feature Type:gene_model
Chromosome:Gm08
Start:9073699
stop:9079530
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g117600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G45760.1AT Transducin/WD40 repeat-like superfamily protein JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG0279 KOG G protein beta subunit-like protein JGI N/AIEA
PTHR22847Panther WD40 REPEAT PROTEIN JGI N/AIEA
PTHR22847:SF207Panther JGI N/AIEA
PF00400PFAM WD domain, G-beta repeat JGI N/AIEA

Expression Patterns of Glyma.08g117600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g117600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g12410 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g117600
>Glyma.08g117600.2 sequence-type=transcript locus=Glyma.08g117600 ID=Glyma.08g117600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAGTCGGGTTCAGTCGTGACACATAAATAGCATACAAGAGACAAATGATTCGTCGTGCCCGGTGTCAGTAACGACGCTTTGCCGCGCGGTTTCATTTCACCGCAGCAACTTGGTGACTCCATTCCCATCACCGCAACCACATACTACTACGTTTCTGTCTTCGTTCCATTCTCTTCCTCTTGTGAGTGCAATCAATCCGTTACATTGTTATATATTCACACACCTGAGCCGATTTAGGTTTAGAGTCTCTTCACTTTAGAAACGGTACCATCGATGGCGGAGAAGGATGTGCCGAAGCTTAAGCTGAAACCTCGAAGACTCAAGGGTCACGACGACAGCACAACCTGCTGCATTGCCTCACGTGAACGCTCTCATCTGATTGTCACTTCCGGCGATGATGGTCGTGTTTGCTGGTTTGACCTGCGATGTCCTGATGTGCCGCAACTGGTTATGGATGTTAGTGTGGAGCCAGTTTCGTCCTTTTGTTTCAAGTCAGGAATGGAAGATATGATTTATGTCTCCTCAGGGAAGGAAATCAAGTGTTTTGATGTGCGATTGGCCGCCGCCCAATGGAAGCCATTGGAGAATTATAATTATAACAAAGAGGAGATAAACAAGGTTGTATGCAACTCAAAGTCCTCATTTGTTGCTGCAGCAGACGATAATGGTGAAGTTAAGATAATTGACATTCGCCAGCAATGCCTGTATAAAACACTACGAGCTGGTCATACAAGTATATGTAGCACTGTGGAATTCCTTCCTTGGAGATCTTGGGAGGTCATTAGTGGAGGTCTTGATTCAATGCTCATGTTGTGGGACTTCTCCAAAGGGCGCCCCTACAAAGTAGTGGATTTTGCTACATTTGATGTGAGTAGTGGCATTGCTGGCCGGTGTGTCAATCCTGCTTTTGTTCATGCAATAGCTGTTCCAGAAGTTGACATGCTAGATAAATTAGACAAAATATGCGCTGCTGCAAGGGGCGATGGAGCTATTGATGTGATTAATATTGAAACAGAAATGGCTGCTACAAAATCAAAAAGCTCTTCAAATTCACGAAAAGGATCACACTCAAGATCAAAAGATGGTAGTTCATCTAGCAATACAGACGCAGATCAAAATGGAAAAAAGAGGTTGCATTTGAATTACACTTTGGGTGGCCATACTGCAGCTGTTTCCAGCCTGGCATTTTCATTGTTTGGGGAAAGAGGGAAATTCTTGATATCTGGAGGAAATGATAAGTTGGTGAAGATATGGAATTGGTCCTGTTATCCAGATGTAGGGTTAAGTGACGACAATAACAATAATATCCTACATTTGAACATTGAAGTATCTCGAAAAGTGAGTTTTGTAATATATTTAATTTAATTGGAACTTTTGGATGTTGGTTAATTGTTCTGCTTCTGCCAAATATGTCTATGATGCATTCATTTATACTCTTTATTTGGCAGGTCAATTGGCTGTGTACCACCTCAGCTGATACAGACAACCTTGTTGTGTGTGACACATCTAAAGTAGTAAAGGTCTACTCTATAACATAGTTTAAAACTAGATGACAGTGATGGATGATGCAATCTTCTTGTGTTggtcatggtttaggaatatggaaaagggttttgtaatgcattttaatcaatggttgagtaatctaagagatggattttgtaatcaggggagggaagcatacataggacctgggtagcctatagcttacaatatgagcagcttatggttagctaattcgactgttcaagcttgtattaggaaaccatatgtctgctgaacttcaaaaatttgtgttcttagtacccctggtacttacatatatacactaatttatctttgctgataaaaaaaaagaTGACAGTGATTATTGGAATGAGTATTCCTGGAGAGCAATCAAAACCTAAAATGACTGTTTGAAATTGTAATGTTTCACTTACTCCAAAGATTGTGCACCTGACAAGAAACGTCCTAAAAGCACAAGGCTTTTAGCCTAGATATACCTGCCTAGGTGCTTGCTTTGCGATTCTCTCCCTGATTCAATGCCTACAAGAACTGTTCAATGATGACCTATACTTCCTCATTTACATGGTGTGTGATTCATACCATGTTTA
Coding sequences of Glyma.08g117600
>Glyma.08g117600.1 sequence-type=CDS polypeptide=Glyma.08g117600.1.p locus=Glyma.08g117600 ID=Glyma.08g117600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGAGAAGGATGTGCCGAAGCTTAAGCTGAAACCTCGAAGACTCAAGGGTCACGACGACAGCACAACCTGCTGCATTGCCTCACGTGAACGCTCTCATCTGATTGTCACTTCCGGCGATGATGGTCGTGTTTGCTGGTTTGACCTGCGATGTCCTGATGTGCCGCAACTGGTTATGGATGTTAGTGTGGAGCCAGTTTCGTCCTTTTGTTTCAAGTCAGGAATGGAAGATATGATTTATGTCTCCTCAGGGAAGGAAATCAAGTGTTTTGATGTGCGATTGGCCGCCGCCCAATGGAAGCCATTGGAGAATTATAATTATAACAAAGAGGAGATAAACAAGGTTGTATGCAACTCAAAGTCCTCATTTGTTGCTGCAGCAGACGATAATGGTGAAGTTAAGATAATTGACATTCGCCAGCAATGCCTGTATAAAACACTACGAGCTGGTCATACAAGTATATGTAGCACTGTGGAATTCCTTCCTTGGAGATCTTGGGAGGTCATTAGTGGAGGTCTTGATTCAATGCTCATGTTGTGGGACTTCTCCAAAGGGCGCCCCTACAAAGTAGTGGATTTTGCTACATTTGATGTGAGTAGTGGCATTGCTGGCCGGTGTGTCAATCCTGCTTTTGTTCATGCAATAGCTGTTCCAGAAGTTGACATGCTAGATAAATTAGACAAAATATGCGCTGCTGCAAGGGGCGATGGAGCTATTGATGTGATTAATATTGAAACAGAAATGGCTGCTACAAAATCAAAAAGCTCTTCAAATTCACGAAAAGGATCACACTCAAGATCAAAAGATGGTAGTTCATCTAGCAATACAGACGCAGATCAAAATGGAAAAAAGAGGTTGCATTTGAATTACACTTTGGGTGGCCATACTGCAGCTGTTTCCAGCCTGGCATTTTCATTGTTTGGGGAAAGAGGGAAATTCTTGATATCTGGAGGAAATGATAAGTTGGTGAAGATATGGAATTGGTCCTGTTATCCAGATGTAGGGTTAAGTGACGACAATAACAATAATATCCTACATTTGAACATTGAAGTATCTCGAAAAGTCAATTGGCTGTGTACCACCTCAGCTGATACAGACAACCTTGTTGTGTGTGACACATCTAAAGTAGTAAAGGTCTACTCTATAACATAG

>Glyma.08g117600.2 sequence-type=CDS polypeptide=Glyma.08g117600.2.p locus=Glyma.08g117600 ID=Glyma.08g117600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGAGAAGGATGTGCCGAAGCTTAAGCTGAAACCTCGAAGACTCAAGGGTCACGACGACAGCACAACCTGCTGCATTGCCTCACGTGAACGCTCTCATCTGATTGTCACTTCCGGCGATGATGGTCGTGTTTGCTGGTTTGACCTGCGATGTCCTGATGTGCCGCAACTGGTTATGGATGTTAGTGTGGAGCCAGTTTCGTCCTTTTGTTTCAAGTCAGGAATGGAAGATATGATTTATGTCTCCTCAGGGAAGGAAATCAAGTGTTTTGATGTGCGATTGGCCGCCGCCCAATGGAAGCCATTGGAGAATTATAATTATAACAAAGAGGAGATAAACAAGGTTGTATGCAACTCAAAGTCCTCATTTGTTGCTGCAGCAGACGATAATGGTGAAGTTAAGATAATTGACATTCGCCAGCAATGCCTGTATAAAACACTACGAGCTGGTCATACAAGTATATGTAGCACTGTGGAATTCCTTCCTTGGAGATCTTGGGAGGTCATTAGTGGAGGTCTTGATTCAATGCTCATGTTGTGGGACTTCTCCAAAGGGCGCCCCTACAAAGTAGTGGATTTTGCTACATTTGATGTGAGTAGTGGCATTGCTGGCCGGTGTGTCAATCCTGCTTTTGTTCATGCAATAGCTGTTCCAGAAGTTGACATGCTAGATAAATTAGACAAAATATGCGCTGCTGCAAGGGGCGATGGAGCTATTGATGTGATTAATATTGAAACAGAAATGGCTGCTACAAAATCAAAAAGCTCTTCAAATTCACGAAAAGGATCACACTCAAGATCAAAAGATGGTAGTTCATCTAGCAATACAGACGCAGATCAAAATGGAAAAAAGAGGTTGCATTTGAATTACACTTTGGGTGGCCATACTGCAGCTGTTTCCAGCCTGGCATTTTCATTGTTTGGGGAAAGAGGGAAATTCTTGATATCTGGAGGAAATGATAAGTTGGTGAAGATATGGAATTGGTCCTGTTATCCAGATGTAGGGTTAAGTGACGACAATAACAATAATATCCTACATTTGAACATTGAAGTATCTCGAAAAGTGAGTTTTGTAATATATTTAATTTAA
Predicted protein sequences of Glyma.08g117600
>Glyma.08g117600.1.p sequence-type=predicted peptide transcript=Glyma.08g117600.1 locus=Glyma.08g117600 ID=Glyma.08g117600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEKDVPKLKLKPRRLKGHDDSTTCCIASRERSHLIVTSGDDGRVCWFDLRCPDVPQLVMDVSVEPVSSFCFKSGMEDMIYVSSGKEIKCFDVRLAAAQWKPLENYNYNKEEINKVVCNSKSSFVAAADDNGEVKIIDIRQQCLYKTLRAGHTSICSTVEFLPWRSWEVISGGLDSMLMLWDFSKGRPYKVVDFATFDVSSGIAGRCVNPAFVHAIAVPEVDMLDKLDKICAAARGDGAIDVINIETEMAATKSKSSSNSRKGSHSRSKDGSSSSNTDADQNGKKRLHLNYTLGGHTAAVSSLAFSLFGERGKFLISGGNDKLVKIWNWSCYPDVGLSDDNNNNILHLNIEVSRKVNWLCTTSADTDNLVVCDTSKVVKVYSIT*

>Glyma.08g117600.2.p sequence-type=predicted peptide transcript=Glyma.08g117600.2 locus=Glyma.08g117600 ID=Glyma.08g117600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEKDVPKLKLKPRRLKGHDDSTTCCIASRERSHLIVTSGDDGRVCWFDLRCPDVPQLVMDVSVEPVSSFCFKSGMEDMIYVSSGKEIKCFDVRLAAAQWKPLENYNYNKEEINKVVCNSKSSFVAAADDNGEVKIIDIRQQCLYKTLRAGHTSICSTVEFLPWRSWEVISGGLDSMLMLWDFSKGRPYKVVDFATFDVSSGIAGRCVNPAFVHAIAVPEVDMLDKLDKICAAARGDGAIDVINIETEMAATKSKSSSNSRKGSHSRSKDGSSSSNTDADQNGKKRLHLNYTLGGHTAAVSSLAFSLFGERGKFLISGGNDKLVKIWNWSCYPDVGLSDDNNNNILHLNIEVSRKVSFVIYLI*






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