SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G09850.1 | AT | xylem bark cysteine peptidase 3 | JGI | N/A | IEA |
| GO:0006508 | GO-bp | proteolysis | EnsemblGenomes | N/A | IEA |
| GO:0006508 | GO-bp | proteolysis | JGI | N/A | IEA |
| GO:0051603 | GO-bp | proteolysis involved in cellular protein catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005615 | GO-cc | extracellular space | EnsemblGenomes | N/A | IEA |
| GO:0005764 | GO-cc | lysosome | EnsemblGenomes | N/A | IEA |
| GO:0005773 | GO-cc | vacuole | EnsemblGenomes | N/A | IEA |
| GO:0004197 | GO-mf | cysteine-type endopeptidase activity | EnsemblGenomes | N/A | IEA |
| GO:0008233 | GO-mf | peptidase activity | EnsemblGenomes | N/A | IEA |
| GO:0008234 | GO-mf | cysteine-type peptidase activity | EnsemblGenomes | N/A | IEA |
| GO:0008234 | GO-mf | cysteine-type peptidase activity | JGI | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| KOG1542 | KOG | Cysteine proteinase Cathepsin F | JGI | N/A | IEA |
| PTHR12411 | Panther | CYSTEINE PROTEASE FAMILY C1-RELATED | JGI | N/A | IEA |
| PTHR12411:SF44 | Panther | JGI | N/A | IEA | |
| PF00112 | PFAM | Papain family cysteine protease | JGI | N/A | IEA |
| PF08246 | PFAM | Cathepsin propeptide inhibitor domain (I29) | JGI | N/A | IEA |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| P34 | P34 probable thiol protease |
|
Glyma.08g116300 not represented in the dataset |
Glyma.08g116300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.05g158600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g12270 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g116300.1 sequence-type=CDS polypeptide=Glyma.08g116300.1.p locus=Glyma.08g116300 ID=Glyma.08g116300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGTTTCCTTGTGTTGCTTCTTTTCTCCCTCTTAGGTCTCTCTTCTAGTTCCAGCATATCAACTCATCGTTCCATATTGGACCTTGACCTAACCAAGTTTACCACACAGAAACAGGTGTCTTCACTGTTCCAACTATGGAAGAGTGAGCATGGACGTGTCTACCATAACCACGAAGAAGAGGCAAAGAGACTTGAGATTTTCAAGAATAACTTGAACTATATCAGGGACATGAATGCAAACAGAAAATCACCCCATTCTCATCGTTTAGGATTGAACAAGTTTGCTGACATCACTCCTCAAGAGTTCAGCAAAAAGTACTTGCAAGCTCCCAAGGATGTGTCGCAGCAAATCAAAATGGCCAACAAGAAAATGAAGAAGGAACAATATTCTTGTGACCATCCACCTGCATCATGGGATTGGAGGAAAAAAGGTGTCATCACCCAAGTAAAGTACCAAGGGGGCTGTGGAAGCGGTTGGGCGTTTTCTGCCACGGGAGCCATAGAAGCAGCACATGCAATAGCAACAGGAGACCTTGTTAGCCTTTCTGAACAAGAACTCGTAGACTGTGTGGAAGAAAGCGAAGGTTGTTACAATGGATGGCACTATCAATCGTTCGAATGGGTTTTAGAACATGGTGGGATTGCCACTGATGATGATTATCCTTACAGAGCTAAAGAGGGTAGATGCAAAGCCAATAAGATACAAGACAAGGTTACAATTGACGGATATGAAACTCTAATAATGTCAGATGAGAGTACAGAATCAGAGACAGAGCAAGCGTTCTTAAGCGCCATCCTTGAGCAACCAATTAGTGTCTCCATTGATGCAAAAGATTTTCATTTATACACCGGGGGAATTTATGATGGAGAAAACTGTACAAGTCCGTATGGGATTAATCACTTTGTTTTACTTGTGGGTTATGGTTCAGCGGATGGTGTAGATTACTGGATAGCGAAAAATTCATGGGGAGAAGATTGGGGAGAAGATGGTTACATTTGGATCCAAAGAAACACGGGTAATTTATTAGGAGTGTGTGGGATGAATTATTTCGCTTCATACCCAACCAAAGAGGAATCAGAAACACTGGTGTCTGCTCGCGTTAAAGGTCATCGAAGAGTTGATCACTCTCCTCTTTGA
>Glyma.08g116300.1.p sequence-type=predicted peptide transcript=Glyma.08g116300.1 locus=Glyma.08g116300 ID=Glyma.08g116300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGFLVLLLFSLLGLSSSSSISTHRSILDLDLTKFTTQKQVSSLFQLWKSEHGRVYHNHEEEAKRLEIFKNNLNYIRDMNANRKSPHSHRLGLNKFADITPQEFSKKYLQAPKDVSQQIKMANKKMKKEQYSCDHPPASWDWRKKGVITQVKYQGGCGSGWAFSATGAIEAAHAIATGDLVSLSEQELVDCVEESEGCYNGWHYQSFEWVLEHGGIATDDDYPYRAKEGRCKANKIQDKVTIDGYETLIMSDESTESETEQAFLSAILEQPISVSIDAKDFHLYTGGIYDGENCTSPYGINHFVLLVGYGSADGVDYWIAKNSWGEDWGEDGYIWIQRNTGNLLGVCGMNYFASYPTKEESETLVSARVKGHRRVDHSPL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
