SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.08g115400

Feature Type:gene_model
Chromosome:Gm08
Start:8848959
stop:8851344
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g115400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G55320.1AT acyl-activating enzyme 18 JGI N/AIEA
PWY0-1313SoyCyc9 acetate conversion to acetyl-CoA Plant Metabolic Network ISS
PWY66-21SoyCyc9 ethanol degradation II Plant Metabolic Network ISS
GN7V-64601SoyCyc9-rxn acetate-CoA ligase Plant Metabolic Network ISS

Expression Patterns of Glyma.08g115400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g115400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g12180 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g115400
>Glyma.08g115400.1 sequence-type=CDS polypeptide=Glyma.08g115400.1.p locus=Glyma.08g115400 ID=Glyma.08g115400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGCTTTCTTCAAAAGCTTACTACAGTCCAATTGTTGAATTGTGTGGAGGCACTGAGCTCGCATCTAGCTACATTGCAGGAAGTCCCTTGCAGCCTCAAGCTTTTGGAGCATTTAGCACAGCATCAATGACAACTGGTTTTGTCATTTTTGACGAAAATGGAGTTCCTTATCCAGATGATGTTGCTTGTGTTGGGGAAGTGGGCTTATTTCCTCTCTCTCTGGGAGCATCTGACAGATTGCTTAATGCTGACCATGAGAAGGTTACTTTAAGGGAATGCCCATTTATAAAGGGAAGGGGTGATGACACCATGAATCTTGGAGGAATAAAGACAAGTTCTGTAGAAATTGAGAGTGTCTGTGATGGAGCGGATGAATGCATTTTGGTGACAGCTGCAGTTGGTGTTGCAACTGCAAATGGAGGCCCAGAACAACTGGTTATATTTGTAGTTTTAAAGGAAGGATACAATTCCAGTGCAGAAACTCTAAAGATGAAATTCACTAAAGCTATTCAAAGCAACCTTAACCCTTTGCTTAAGGTAAGCCTTGCTAAAATTGTGCCAGAGTTTCCTGGGACATCTTCCAACAAAATACCGAGGAGAGTAATGAGGGATCAAATGAAGCGTGAGCTATCAGTCCAGAGCAGACTTTAG
Predicted protein sequences of Glyma.08g115400
>Glyma.08g115400.1.p sequence-type=predicted peptide transcript=Glyma.08g115400.1 locus=Glyma.08g115400 ID=Glyma.08g115400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWLSSKAYYSPIVELCGGTELASSYIAGSPLQPQAFGAFSTASMTTGFVIFDENGVPYPDDVACVGEVGLFPLSLGASDRLLNADHEKVTLRECPFIKGRGDDTMNLGGIKTSSVEIESVCDGADECILVTAAVGVATANGGPEQLVIFVVLKEGYNSSAETLKMKFTKAIQSNLNPLLKVSLAKIVPEFPGTSSNKIPRRVMRDQMKRELSVQSRL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo