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Report for Sequence Feature Glyma.08g113500

Feature Type:gene_model
Chromosome:Gm08
Start:8707827
stop:8711852
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g113500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G19485.1AT transferases;nucleotidyltransferases JGI N/AIEA
GO:0009058GO-bp biosynthetic process EnsemblGenomesN/AIEA
GO:0009058GO-bp biosynthetic process JGI N/AIEA
GO:0016779GO-mf nucleotidyltransferase activity EnsemblGenomesN/AIEA
GO:0016779GO-mf nucleotidyltransferase activity JGI N/AIEA
KOG1462 KOG Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) JGI N/AIEA
PTHR22572Panther SUGAR-1-PHOSPHATE GUANYL TRANSFERASE JGI N/AIEA
PF00483PFAM Nucleotidyl transferase JGI N/AIEA

Expression Patterns of Glyma.08g113500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g113500
ParalogEvidenceComments
Glyma.05g155700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g113500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g11970 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g113500
>Glyma.08g113500.1 sequence-type=CDS polypeptide=Glyma.08g113500.1.p locus=Glyma.08g113500 ID=Glyma.08g113500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTTCCAAGTGGTCGTTCTCGGCGGTGGCCTTTCCAAGAAGCTCCTCCCTCTCGTTTCTCAGGAGCTTCCGAACGCGTTGCTTCCGGTGGCGAATCGCCCCGTTCTCTCCTACGTTCTCGAGTACTTGGAGCTTAGCAACCTCAAAGATCTCATTGTGGTGGTTGAAGGCGAAGAAGCGGTTCTTCATGTTGGGGCTTGGATTTCGGGGGCTTATGCTGATCGCCTCCACGTTGAGGTTGCTGCAGTTCCTGAGGATGTGGGGACAGCGGGTGCAATTCGGGCCATTTCGCATCACCTAACAGCTAAAGACATTTTGGTTGTCAGTGGTGATCTTGTTACCGATGTTCCACTTGGTGCTGTTGCAGCTACTCATAGACGGCATGATGCAGTTGTCACTGCTATGCTTTGCTCTGCTCCTGTAAGTGGACCTTCGGAGTCAGTATCCTCTGGTGGGAAAGACAAAATCAAGAAACCTGGCCGTTATGATTTGATAGGGCTGGACCCCACAAAACAGTTTTTAGTTCACATAGCAACTGGAGCAGAAGTTGAAAAAGATCTTCGAATTCAGAAGAGCATGCTCCCTGCAGTTGGCCAGATAGAAATAAGAGCTGATCTAATGGACGCCCACTTGTATGCATTCAAAAGATCAGTTCTACAAGAAGTTCTAGATCAGAAGAGTGCATTTCATAGCTTAAAGCATGATGTATTGCCATATCTAGTCCGGAGCCAACTGAAATCAGAAGTATTATTAAATGGTATGCCACAAGCAGAAGAAAACGGAACTGAAAAGGTTATTTCTCAAAGCAATCAACAAATGCTATCTCAAATACTCGCTAATGCATCTGAACCAATCTTTCATCTACGAAATGCACTGGGTCCTCATGGTTCTACTTCTGATCGAAGAACCCACAAATGTTGTGTGTATATTGCTGGAAGCAGCAAGTACTGTGCTCGCTTAAATTCTATACAAGCATACAGTGACATAAACCGAGATGTGACAGGAGAGGCTAGTCACTTATCAGGGTATTCCTTCTCTGCTCAAAACAACATTATCCATCCTTCTGCAGAGCTTGGGGCAAAAACAACTGTTGGACCACATTGTATACTGGGGGAAGGTTCACAGATGGGTGACAAATGCAGTGTGAAACGATCTGTCATTGGCCGTCATTGTCGGATAGGTCCCAATGTTAAGGTTGTCAATTCAGTAGTTATGAATCATGTTACTATTGGAGAATCTTGTTCAATCCAAGGTTCTATTATCTGCAGCAATGTACAGCTCCAAGAACGTGCCATCCTAAAAGATTGCCAAGTTGGAGCAGGTTTTGTGGTCACTGCTGGTAGTGAGTGCAAGGGGGAGGTCTTGGCTAAGAAATGA
Predicted protein sequences of Glyma.08g113500
>Glyma.08g113500.1.p sequence-type=predicted peptide transcript=Glyma.08g113500.1 locus=Glyma.08g113500 ID=Glyma.08g113500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDFQVVVLGGGLSKKLLPLVSQELPNALLPVANRPVLSYVLEYLELSNLKDLIVVVEGEEAVLHVGAWISGAYADRLHVEVAAVPEDVGTAGAIRAISHHLTAKDILVVSGDLVTDVPLGAVAATHRRHDAVVTAMLCSAPVSGPSESVSSGGKDKIKKPGRYDLIGLDPTKQFLVHIATGAEVEKDLRIQKSMLPAVGQIEIRADLMDAHLYAFKRSVLQEVLDQKSAFHSLKHDVLPYLVRSQLKSEVLLNGMPQAEENGTEKVISQSNQQMLSQILANASEPIFHLRNALGPHGSTSDRRTHKCCVYIAGSSKYCARLNSIQAYSDINRDVTGEASHLSGYSFSAQNNIIHPSAELGAKTTVGPHCILGEGSQMGDKCSVKRSVIGRHCRIGPNVKVVNSVVMNHVTIGESCSIQGSIICSNVQLQERAILKDCQVGAGFVVTAGSECKGEVLAKK*






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