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Report for Sequence Feature Glyma.08g111500

Feature Type:gene_model
Chromosome:Gm08
Start:8590409
stop:8596833
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g111500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G14147.1AT protein binding JGI N/AIEA
GO:0030041GO-bp actin filament polymerization EnsemblGenomesN/AIEA
GO:0030041GO-bp actin filament polymerization JGI N/AIEA
GO:0030833GO-bp regulation of actin filament polymerization EnsemblGenomesN/AIEA
GO:0034314GO-bp Arp2/3 complex-mediated actin nucleation EnsemblGenomesN/AIEA
GO:0034314GO-bp Arp2/3 complex-mediated actin nucleation JGI N/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005856GO-cc cytoskeleton EnsemblGenomesN/AIEA
GO:0005856GO-cc cytoskeleton JGI N/AIEA
GO:0005885GO-cc Arp2/3 protein complex EnsemblGenomesN/AIEA
GO:0005885GO-cc Arp2/3 protein complex JGI N/AIEA
GO:0015629GO-cc actin cytoskeleton EnsemblGenomesN/AIEA
GO:0003779GO-mf actin binding EnsemblGenomesN/AIEA
KOG1876 KOG Actin-related protein Arp2/3 complex, subunit ARPC4 JGI N/AIEA
PTHR22629Panther ARP2/3 COMPLEX 20 KD SUBUNIT JGI N/AIEA
PF05856PFAM ARP2/3 complex 20 kDa subunit (ARPC4) JGI N/AIEA

Proteins Associated with Glyma.08g111500
LocusGene SymbolProtein Name
ARPC4 ARP2/3 complex 20 kDa subunit 4

Expression Patterns of Glyma.08g111500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g111500 not represented in the dataset
Glyma.08g111500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g111500
ParalogEvidenceComments
Glyma.05g153800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g111500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g11740 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g111500
>Glyma.08g111500.1 sequence-type=CDS polypeptide=Glyma.08g111500.1.p locus=Glyma.08g111500 ID=Glyma.08g111500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAAATACGTTGCGGTTATACTTGACCTGCATTCGGAACACGCTCGAGGCCGCAATGTGCCTCCAGAACTTTCCGTGTCAAGAAGTCGAAAGGCATAACAAGCCCGAGGTTGAACTCAAGACCAGCCCCGAACTCCTGCTCAATCCCGTTTTGATATGCCGAAATGAGGCTGAAAAATGCTTAATAGAAACATCTATCAATTCATTGCGGATAAGTCTCAAGGTGAAGCAGGCTGATGAACTTGAAAACATATTGACCAAAAAATTTCTAAGATTTCTCTCAATGAGAGCCGAGGCTTTCCAAGTACTGAGGAGAAAGCCTGTTCAGGGATATGACATTAGCTTCCTTATAACAAATTACCACTGTGAGGAGATGCAGAAGCACAAACTCATTGACTTTATTGTGCAATTTATGGAGGACATTGATAAAGAGATAAGCGAGCTCAAAATGTCGGTGAACACAAGGGGGAGGCTTGTAGCTACAGAGTTTCTGAAGCAGTTTATCTGA
Predicted protein sequences of Glyma.08g111500
>Glyma.08g111500.1.p sequence-type=predicted peptide transcript=Glyma.08g111500.1 locus=Glyma.08g111500 ID=Glyma.08g111500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MANTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKHKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI*






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