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Report for Sequence Feature Glyma.08g109400

Feature Type:gene_model
Chromosome:Gm08
Start:8391364
stop:8394840
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g109400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G13930.1AT Chalcone and stilbene synthase family protein JGI N/AIEA
GO:0006633GO-bp fatty acid biosynthetic process JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008610GO-bp lipid biosynthetic process JGI N/AIEA
GO:0009058GO-bp biosynthetic process EnsemblGenomesN/AIEA
GO:0009058GO-bp biosynthetic process JGI N/AIEA
GO:0009813GO-bp flavonoid biosynthetic process EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0004315GO-mf 3-oxoacyl-[acyl-carrier-protein] synthase activity JGI N/AIEA
GO:0016210GO-mf naringenin-chalcone synthase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016746GO-mf transferase activity, transferring acyl groups EnsemblGenomesN/AIEA
GO:0016746GO-mf transferase activity, transferring acyl groups JGI N/AIEA
GO:0016747GO-mf transferase activity, transferring acyl groups other than amino-acyl groups EnsemblGenomesN/AIEA
GO:0016747GO-mf transferase activity, transferring acyl groups other than amino-acyl groups JGI N/AIEA
PTHR11877Panther HYDROXYMETHYLGLUTARYL-COA SYNTHASE JGI N/AIEA
PTHR11877:SF9Panther JGI N/AIEA
PF00195PFAM Chalcone and stilbene synthases, N-terminal domain JGI N/AIEA
PF02797PFAM Chalcone and stilbene synthases, C-terminal domain JGI N/AIEA
PWY-6787SoyCyc9 flavonoid biosynthesis (in equisetum) Plant Metabolic Network ISS
PWY1F-FLAVSYNSoyCyc9 flavonoid biosynthesis Plant Metabolic Network ISS
GN7V-61840SoyCyc9-rxn naringenin-chalcone synthase Plant Metabolic Network ISS

Proteins Associated with Glyma.08g109400
LocusGene SymbolProtein Name
I CHS1 chalcone synthase 1
I GMACHS1 chalcone synthase 1

Expression Patterns of Glyma.08g109400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g109400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g11620 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g109400
>Glyma.08g109400.1 sequence-type=CDS polypeptide=Glyma.08g109400.1.p locus=Glyma.08g109400 ID=Glyma.08g109400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGAGTGTTGAAGAGATTCGTAAGGCGCAACGTGCAGAAGGCCCTGCCACTGTCATGGCTATTGGCACCGCCACTCCTCCCAACTGCGTGGATCAGAGTACCTATCCTGACTATTATTTCCGCATCACCAACAGCGAGCACATGACCGAGCTCAAAGAAAAATTCAAGCGCATGTGTGATAAGTCGATGATTAAGAAGCGATACATGTACTTAAACGAAGAGATCCTGAAAGAGAATCCGAGTGTTTGTGCTTACATGGCACCTTCGTTGGATGCAAGGCAAGACATGGTGGTTGTGGAGGTACCAAAGTTGGGAAAAGAGGCTGCAACTAAGGCAATCAAGGAATGGGGTCAACCCAAGTCCAAGATTACCCATCTCATCTTTTGCACCACTAGTGGTGTCGACATGCCTGGTGCTGATTATCAGCTCACTAAACTATTAGGCCTTCGCCCCTCCGTCAAGCGTTACATGATGTACCAACAAGGCTGCTTTGCCGGTGGCACGGTGCTTCGTTTGGCCAAAGACCTCGCTGAAAACAACAAGGGTGCTCGCGTGCTTGTCGTTTGTTCTGAGATCACCGCAGTCACATTTCGCGGCCCAACTGACACCCATCTTGATAGCCTTGTGGGTCAAGCCTTGTTTGGAGATGGTGCAGCCGCTGTCATTGTTGGATCAGACCCCTTACCAGTTGAAAAGCCTTTGTTTCAGCTTGTCTGGACTGCCCAGACAATCCTTCCAGACAGTGAAGGGGCTATTGATGGACACCTTCGCGAAGTTGGTCTCACTTTCCATCTCCTCAAGGATGTTCCTGGACTCATCTCCAAGAATATTGAGAAGGCCTTGGTTGAAGCCTTCCAACCCTTGGGAATCTCCGATTACAATTCTATCTTCTGGATTGCACACCCTGGTGGACCCGCAATTTTGGACCAAGTTGAGGCTAAGTTAGGCCTGAAGCCTGAAAAAATGGAAGCTACTAGACATGTGCTCAGCGAGTATGGTAACATGTCAAGTGCATGCGTGCTATTCATCTTGGATCAAATGAGGAAGAAATCAATAGAAAATGGACTTGGCACAACCGGTGAAGGTCTTGACTGGGGTGTGCTATTTGGTTTCGGCCCTGGACTCACCGTTGAGACTGTTGTGCTCCGCAGTGTCACTCTCTGA
Predicted protein sequences of Glyma.08g109400
>Glyma.08g109400.1.p sequence-type=predicted peptide transcript=Glyma.08g109400.1 locus=Glyma.08g109400 ID=Glyma.08g109400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVSVEEIRKAQRAEGPATVMAIGTATPPNCVDQSTYPDYYFRITNSEHMTELKEKFKRMCDKSMIKKRYMYLNEEILKENPSVCAYMAPSLDARQDMVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPTDTHLDSLVGQALFGDGAAAVIVGSDPLPVEKPLFQLVWTAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKALVEAFQPLGISDYNSIFWIAHPGGPAILDQVEAKLGLKPEKMEATRHVLSEYGNMSSACVLFILDQMRKKSIENGLGTTGEGLDWGVLFGFGPGLTVETVVLRSVTL*






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