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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G13940.1 | AT | S-adenosyl-L-homocysteine hydrolase | JGI | N/A | IEA |
| GO:0006730 | GO-bp | one-carbon metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006730 | GO-bp | one-carbon metabolic process | JGI | N/A | IEA |
| GO:0008652 | GO-bp | cellular amino acid biosynthetic process | JGI | N/A | IEA |
| GO:0019510 | GO-bp | S-adenosylhomocysteine catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0033353 | GO-bp | S-adenosylmethionine cycle | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0004013 | GO-mf | adenosylhomocysteinase activity | EnsemblGenomes | N/A | IEA |
| GO:0004013 | GO-mf | adenosylhomocysteinase activity | JGI | N/A | IEA |
| GO:0004455 | GO-mf | ketol-acid reductoisomerase activity | JGI | N/A | IEA |
| GO:0016616 | GO-mf | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | JGI | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0048037 | GO-mf | cofactor binding | JGI | N/A | IEA |
| GO:0051287 | GO-mf | NAD binding | EnsemblGenomes | N/A | IEA |
| KOG1370 | KOG | S-adenosylhomocysteine hydrolase | JGI | N/A | IEA |
| PTHR23420 | Panther | ADENOSYLHOMOCYSTEINASE | JGI | N/A | IEA |
| PF00670 | PFAM | S-adenosyl-L-homocysteine hydrolase, NAD binding domain | JGI | N/A | IEA |
| PF05221 | PFAM | S-adenosyl-L-homocysteine hydrolase | JGI | N/A | IEA |
| METHIONINE-DEG1-PWY | SoyCyc9 | L-methionine degradation I (to L-homocysteine) | Plant Metabolic Network | ISS | |
| PWY-5041 | SoyCyc9 | S-adenosyl-L-methionine cycle II | Plant Metabolic Network | ISS | |
| GN7V-62324 | SoyCyc9-rxn | adenosylhomocysteinase | Plant Metabolic Network | ISS |
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Glyma.08g108800 not represented in the dataset |
Glyma.08g108800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.05g152000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g11480 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g108800.1 sequence-type=CDS polypeptide=Glyma.08g108800.1.p locus=Glyma.08g108800 ID=Glyma.08g108800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTTTGTTGGTGGAGAAAACCACGAGTGGTCGCGAGTACAAGGTCAAGGACCTTTCCCAGGCCGACTTCGGCCGCCTCGAGATCGAGCTGGCCGAGGTTGAGATGCCCGGCCTCATGGCCTGTCGGACCGAGTTCGGCCCCTCCCAGCCCTTCAAGGGGGCCCGCATCACCGGCTCCCTCCACATGACCATCCAGACCGCCGTTCTCATTGAGACCCTCACCGCCCTTGGCGCCGAGGTCCGCTGGTGCTCCTGCAACATCTTCTCCACCCAGGACCACGCCGCCGCCGCTATTGCCCGCGACAGTGCCGCCGTCTTCGCCTGGAAGGGTGAGACCCTCCAGGAGTACTGGTGGTGCACCGAGCGCGCCCTCGACTGGGGCCCCGGTGGTGGACCCGACCTCATCGTCGACGACGGTGGTGACGCTACCCTTCTCATCCACGAAGGCGTCAAGGCCGAGGAGCTCTATGAGAAGACCGGCGAACTCCCCGACCCCAACTCCACCGACAACGCCGAGTTTCAGATCGTGCTTACCATCATCAGAGATGGGTTGAAGACCGATCCCACCAGGTACCGCAAGATGAAGGAGCGTCTCGTTGGGGTTTCTGAGGAAACCACCACTGGAGTTAAGAGGCTCTATCAGATGCAGGCGAATGGGACTCTTCTCTTCCCTGCTATTAATGTCAATGACTCTGTCACCAAGAGCAAGTTTGACAACTTGTATGGGTGCCGTCACTCTCTCCCTGATGGTCTCATGAGGGCTACCGATGTTATGATTGCTGGAAAGGTGGCTGTTGTGGCTGGATATGGTGATGTTGGCAAGGGTTGTGCTGCTGCAATGAAGCAGGCTGGTGCTCGTGTCATCGTGACCGAGATTGATCCCATCTGTGCCCTTCAGGCTCTCATGGAAGGCCTTCAGGTTCTGACCTTGGAGGATGTTGTTTCTGAGGCTGATATCTTTGTCACCACCACCGGTAACAAGGACATCATCATGGTTGACCACATGAGGAAAATGAAGAACAATGCCATTGTTTGCAACATTGGTCACTTTGACAATGAGATCGACATGCTTGGGCTGGAGAACTACCCCGGCGTGAAGCGCATCACCATCAAGCCCCAAACTGACAGATGGGTCTTCCCTGAGACCAACACCGGTATCATTGTCTTGGCTGAGGGTCGATTGATGAACTTGGGATGCGCCACTGGACACCCCAGTTTTGTGATGTCCTGCTCCTTCACCAACCAGGTCATTGCTCAGCTTGAGTTGTGGAAGGAGAAGAGTACCGGCAAGTACGAGAAGAAGGTTTACGTTTTGCCCAAGCACCTTGATGAGAAGGTGGCTGCACTTCACCTGGGCAAACTTGGAGCTAAGCTGACCCAGCTTAGCAAGTCCCAGGCTGATTACATCAGTGTGCCTGTTGAGGGTCCATACAAGCCTGCTCACTACAGGTACTAA
>Glyma.08g108800.1.p sequence-type=predicted peptide transcript=Glyma.08g108800.1 locus=Glyma.08g108800 ID=Glyma.08g108800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MALLVEKTTSGREYKVKDLSQADFGRLEIELAEVEMPGLMACRTEFGPSQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDATLLIHEGVKAEELYEKTGELPDPNSTDNAEFQIVLTIIRDGLKTDPTRYRKMKERLVGVSEETTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVAGYGDVGKGCAAAMKQAGARVIVTEIDPICALQALMEGLQVLTLEDVVSEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLENYPGVKRITIKPQTDRWVFPETNTGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTQLSKSQADYISVPVEGPYKPAHYRY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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