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Report for Sequence Feature Glyma.08g107800

Feature Type:gene_model
Chromosome:Gm08
Start:8296196
stop:8307328
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g107800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G19710.2AT aspartate kinase-homoserine dehydrogenase ii JGI N/AIEA
GO:0006520GO-bp cellular amino acid metabolic process EnsemblGenomesN/AIEA
GO:0006520GO-bp cellular amino acid metabolic process JGI N/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0008652GO-bp cellular amino acid biosynthetic process EnsemblGenomesN/AIEA
GO:0009067GO-bp aspartate family amino acid biosynthetic process EnsemblGenomesN/AIEA
GO:0009089GO-bp lysine biosynthetic process via diaminopimelate EnsemblGenomesN/AIEA
GO:0009090GO-bp homoserine biosynthetic process EnsemblGenomesN/AIEA
GO:0016310GO-bp phosphorylation EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009536GO-cc plastid EnsemblGenomesN/AIEA
GO:0009570GO-cc chloroplast stroma EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0004072GO-mf aspartate kinase activity EnsemblGenomesN/AIEA
GO:0004412GO-mf homoserine dehydrogenase activity EnsemblGenomesN/AIEA
GO:0016301GO-mf kinase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0016597GO-mf amino acid binding JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0050661GO-mf NADP binding EnsemblGenomesN/AIEA
GO:0050661GO-mf NADP binding JGI N/AIEA
KOG0455 KOG Homoserine dehydrogenase JGI N/AIEA
PTHR21499Panther ASPARTATE KINASE JGI N/AIEA
PTHR21499:SF3Panther ASPARTOKINASE JGI N/AIEA
PF00696PFAM Amino acid kinase family JGI N/AIEA
PF00742PFAM Homoserine dehydrogenase JGI N/AIEA
PF01842PFAM ACT domain JGI N/AIEA
PF03447PFAM Homoserine dehydrogenase, NAD binding domain JGI N/AIEA
HOMOSERSYN-PWYSoyCyc9 L-homoserine biosynthesis Plant Metabolic Network ISS
PWY-3001SoyCyc9 superpathway of L-isoleucine biosynthesis I Plant Metabolic Network ISS
PWY-5097SoyCyc9 L-lysine biosynthesis VI Plant Metabolic Network ISS
PWY-724SoyCyc9 superpathway of L-lysine, L-threonine and L-methionine biosynthesis II Plant Metabolic Network ISS
THRESYN-PWYSoyCyc9 superpathway of L-threonine biosynthesis Plant Metabolic Network ISS
GN7V-44712SoyCyc9-rxn homoserine dehydrogenase Plant Metabolic Network ISS

Proteins Associated with Glyma.08g107800
LocusGene SymbolProtein Name
AK-HSDH aspartokinase-homoserine dehydrogenase

Expression Patterns of Glyma.08g107800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g107800 not represented in the dataset
Glyma.08g107800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g107800
ParalogEvidenceComments
Glyma.05g151100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g107800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g11370 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g107800
>Glyma.08g107800.1 sequence-type=CDS polypeptide=Glyma.08g107800.1.p locus=Glyma.08g107800 ID=Glyma.08g107800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTCGTTTTCCGCCGCCGTCGCTCAGTTCTCCCGCGTTTCACCTTCTCACACTTCGCTCCACTCTCACTCTCACGGCACGCTCTTCCAATCTCAATGCCGCCCTTTCTTCCTCTCGCGCACTTCCCATTCACTCCGGAAGGGTCTTACTTTACCACGGGGAAGAGAGGCACCGAGTACATCTGTACGTGCTTCATTTACAGATGTTTCACCGAATGTGTCCTTGGAGGAAAAACAACTACCCAAAGGAGAAACTTGGTCTGTTCACAAATTTGGTGGAACCTGTGTGGGAACCTCTCAGAGAATAAAAAATGTTGCGGACATAATTCTTAAGGATGATTCGGAGAGGAAATTGGTGGTTGTTTCTGCAATGTCAAAGGTGACAGATATGATGTATGACCTTATCCACAAGGCTCAATCACGCGATGAGTCTTATACAGCTGCATTAAATGCTGTTTTGGAGAAGCACAGTGCAACTGCACATGACATACTTGATGGAGATAATCTTGCTACTTTCTTGTCTAAATTGCATCATGATATTAGTAACCTTAAGGCGATGCTTCGTGCAATATACATAGCTGGTCATGCAACAGAGTCCTTTACAGATTTTGTTGTGGGACATGGAGAATTATGGTCTGCTCAGATGTTGTCTCTAGTTATTAGGAAGAATGGGACTGATTGCAAATGGATGGATACAAGGGATGTCCTTATCGTAAATCCTACTGGTTCTAATCAAGTTGATCCTGACTATTTGGAATCTGAGCAAAGACTTGAAAAATGGTACTCTTTGAATCCATGTAAGGTAATCATTGCCACTGGATTCATTGCAAGCACACCTCAAAACATTCCTACCACACTGAAGAGAGATGGAAGTGACTTCTCGGCAGCAATTATGGGTGCTCTATTTAAGGCTCGTCAGGTCACAATTTGGACAGATGTTGATGGTGTGTATAGTGCAGATCCTAGAAAAGTTAGTGAGGCTGTGATTTTGAAGACACTGTCTTATCAAGAGGCTTGGGAAATGTCTTATTTTGGTGCCAATGTCTTGCATCCCCGCACAATTATTCCTGTGATGCGATATGGCATACCCATTATGATAAGGAACATTTTCAACCTTTCTGCTCCTGGAACAAAGATCTGCCATCCTTCTGTTAATGATCATGAAGATAGCCAGAACCTGCAAAATTTTGTCAAAGGATTTGCAACCATAGACAACTTGGCACTTGTAAACGTCGAGGGAACTGGAATGGCTGGTGTTCCAGGTACTGCCAGTGCTATTTTTGGTGCAGTAAAAGATGTTGGAGCTAATGTTATCATGATATCTCAGGCTAGTAGTGAGCATTCTGTATGCTTTGCTGTGCCCGAGAAAGAAGTAAAAGCTGTTGCTGAGGCATTGCAATCTAGATTTCGTCAAGCTTTGGATAATGGGCGTCTTTCTCAGGTTGCAGTCATTCCAAATTGTAGCATTCTGGCTGCAGTTGGCCAGAAAATGGCAAGCACTCCTGGTGTTAGTGCCTCCCTTTTCAATGCATTGGCTAAGGCCAATATAAATGTCCGTGCTATAGCCCAAGGTTGTTCTGAGTACAATATTACTGTTGTTGTTAAGCGAGAGGATTGTATAAAGGCTTTACGAGCTGTCCATTCCAGATTTTATCTCTCAAGAACCACCATAGCAATGGGCATTATTGGACCTGGATTAATTGGGAGCACACTACTTGAGCAGCTAAGGGATCAGGCCTCAACCCTAAAAGAAGAATTCAACATCGATTTGCGTGTAATGGGCATACTTGGTTCAAAGTCAATGCTTCTTAGTGATGTGGGCATTGACTTAGCTAGATGGAGAGAACTTCGAGAGGAAAGAGGAGAAGTGGCTAATATGGAAAAATTTGTTCAACATGTACATGGAAATCATTTTATACCAAACACGGCATTAGTGGACTGCACAGCTGACTCTGTCATTGCTGGCTATTACTATGATTGGTTGCGCAAAGGAATACATGTAGTTACTCCTAACAAGAAGGCAAATTCAGGACCACTTGATCAGTATTTGAAGTTAAGAGCTCTTCAAAGGCAATCCTATACACATTACTTCTATGAAGCAACTGTCGGAGCTGGTCTTCCAATTGTTAGCACTTTACGTGGCCTCCTTGAAACTGGAGACAAAATATTACAAATCGAAGGCATCTTTAGTGGGACTTTGAGTTACATATTTAATAACTTTAAAGATGGCCGGGCTTTTAGTGAGGTAGTTTCTGAAGCAAAGGAAGCAGGTTATACTGAGCCAGATCCAAGAGATGATCTGTCTGGAACAGATGTTGCCAGAAAGGTTATAATTCTTGCTAGGGAGTCGGGTTTAAAGCTAGAACTGTCTAATATTCCAGTTGAAAGCCTTGTGCCAGAACCACTACGAGCTTGTGCATCAGCTCAGGAGTTTATGCAAGAGCTACCAAAATTTGATCAGGAGTTCACAAAGAAACAAGAAGATGCTGAGAATGCTGGGGAAGTCTTGAGATACGTTGGAGTGGTGGACGTGACTAATAAAAAAGGAGTGGTAGAGCTGCGAAGATACAAGAAGGATCATCCCTTTGCGCAATTGTCTGGGTCAGATAACATTATTGCATTTACAACACGAAGGTATAAGGATCAGCCTCTGATAGTTCGTGGGCCAGGAGCTGGTGCTCAAGTCACCGCTGGTGGAATATTTAGTGATATTTTACGACTTGCCTCATATCTTGGTGCTCCATCGTAA
Predicted protein sequences of Glyma.08g107800
>Glyma.08g107800.1.p sequence-type=predicted peptide transcript=Glyma.08g107800.1 locus=Glyma.08g107800 ID=Glyma.08g107800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASFSAAVAQFSRVSPSHTSLHSHSHGTLFQSQCRPFFLSRTSHSLRKGLTLPRGREAPSTSVRASFTDVSPNVSLEEKQLPKGETWSVHKFGGTCVGTSQRIKNVADIILKDDSERKLVVVSAMSKVTDMMYDLIHKAQSRDESYTAALNAVLEKHSATAHDILDGDNLATFLSKLHHDISNLKAMLRAIYIAGHATESFTDFVVGHGELWSAQMLSLVIRKNGTDCKWMDTRDVLIVNPTGSNQVDPDYLESEQRLEKWYSLNPCKVIIATGFIASTPQNIPTTLKRDGSDFSAAIMGALFKARQVTIWTDVDGVYSADPRKVSEAVILKTLSYQEAWEMSYFGANVLHPRTIIPVMRYGIPIMIRNIFNLSAPGTKICHPSVNDHEDSQNLQNFVKGFATIDNLALVNVEGTGMAGVPGTASAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALQSRFRQALDNGRLSQVAVIPNCSILAAVGQKMASTPGVSASLFNALAKANINVRAIAQGCSEYNITVVVKREDCIKALRAVHSRFYLSRTTIAMGIIGPGLIGSTLLEQLRDQASTLKEEFNIDLRVMGILGSKSMLLSDVGIDLARWRELREERGEVANMEKFVQHVHGNHFIPNTALVDCTADSVIAGYYYDWLRKGIHVVTPNKKANSGPLDQYLKLRALQRQSYTHYFYEATVGAGLPIVSTLRGLLETGDKILQIEGIFSGTLSYIFNNFKDGRAFSEVVSEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSNIPVESLVPEPLRACASAQEFMQELPKFDQEFTKKQEDAENAGEVLRYVGVVDVTNKKGVVELRRYKKDHPFAQLSGSDNIIAFTTRRYKDQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAPS*






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