SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.08g105700

Feature Type:gene_model
Chromosome:Gm08
Start:8166200
stop:8168551
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g105700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G07880.1AT Immunoglobulin E-set superfamily protein JGI N/AIEA
GO:0050790GO-bp regulation of catalytic activity EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm JGI N/AIEA
GO:0005094GO-mf Rho GDP-dissociation inhibitor activity EnsemblGenomesN/AIEA
GO:0005094GO-mf Rho GDP-dissociation inhibitor activity JGI N/AIEA
KOG3205 KOG Rho GDP-dissociation inhibitor JGI N/AIEA
PTHR10980Panther RHO GDP-DISSOCIATION INHIBITOR JGI N/AIEA
PTHR10980:SF2Panther JGI N/AIEA
PF02115PFAM RHO protein GDP dissociation inhibitor JGI N/AIEA

Expression Patterns of Glyma.08g105700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g105700
ParalogEvidenceComments
Glyma.05g149100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g105700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g11140 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g105700
>Glyma.08g105700.1 sequence-type=CDS polypeptide=Glyma.08g105700.1.p locus=Glyma.08g105700 ID=Glyma.08g105700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTGCTGCTGTGTCTGCAACCAAGGATGTTCCCTTCAATGCTCATTTGGAGGAAGATATCAAAAACAAAGAAATCAACAAGGTTGTTAATGTTGGGGAAGCAGACCAGATTCCTTACAATGATGATGCTGAAGGAACTGATTCAGAGGCAGAGGAAGACCCCAAGTTGGAATTGGATCTTGGCCCTCAGTGTTCCCTCAAGGAACAGCTTGAGAAAGATAAAGAGGATGAAAGTTTGAGAAAATGGAAGGAGCAACTTCTGGGAGGTATTGATGTGTCTGCTGTTGGAGAAAACAAAGAGCCCGAAGTGAAGATAGTGAGCCTTACCATTATATGTCCAGGGAGGCCTGACCTCATTCTGCCAATTCCATTTACTTCTGATGCTAAGAAGAGTATCTTCACCCTTAAGGAAGGAAGTCAATACCAGTTGAAATTCTCTTTCACTGTCTCCAACAACATTGTTTCTGGCCTCAAATACACCAATGTTGTTTGGAAAACTGGGCTTAGAGTGGACAACACAAAAAAAATGTTGGGAACTTATAGCCCAAGCCAGGAACTATATACATATGAATTGGAAGAAGAAACTACCCCTTCAGGGTTGTTTGCTAGGGGAACCTATTCAGCAAGAACCAAGTTTGTAGATGATGATCGGAAATGCTACTTGGATACTAGTTACCACTTTGAAATTCAGAAGAATTGGCCTACACCCATCTAA
Predicted protein sequences of Glyma.08g105700
>Glyma.08g105700.1.p sequence-type=predicted peptide transcript=Glyma.08g105700.1 locus=Glyma.08g105700 ID=Glyma.08g105700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSAAVSATKDVPFNAHLEEDIKNKEINKVVNVGEADQIPYNDDAEGTDSEAEEDPKLELDLGPQCSLKEQLEKDKEDESLRKWKEQLLGGIDVSAVGENKEPEVKIVSLTIICPGRPDLILPIPFTSDAKKSIFTLKEGSQYQLKFSFTVSNNIVSGLKYTNVVWKTGLRVDNTKKMLGTYSPSQELYTYELEEETTPSGLFARGTYSARTKFVDDDRKCYLDTSYHFEIQKNWPTPI*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo