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Report for Sequence Feature Glyma.08g103900

Feature Type:gene_model
Chromosome:Gm08
Start:7970507
stop:7974378
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g103900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G67980.1AT caffeoyl-CoA 3-O-methyltransferase JGI N/AIEA
GO:0006464GO-bp cellular protein modification process JGI N/AIEA
GO:0032259GO-bp methylation EnsemblGenomesN/AIEA
GO:0004719GO-mf protein-L-isoaspartate (D-aspartate) O-methyltransferase activity JGI N/AIEA
GO:0008171GO-mf O-methyltransferase activity EnsemblGenomesN/AIEA
GO:0008171GO-mf O-methyltransferase activity JGI N/AIEA
KOG1663 KOG O-methyltransferase JGI N/AIEA
PTHR10509Panther O-METHYLTRANSFERASE-RELATED JGI N/AIEA
PF01596PFAM O-methyltransferase JGI N/AIEA
GN7V-48909SoyCyc9-rxn flavonoid 3',5'-methyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.08g103900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g103900 not represented in the dataset
Glyma.08g103900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g103900
ParalogEvidenceComments
Glyma.05g147000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g103900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g10930 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g103900
>Glyma.08g103900.2 sequence-type=transcript locus=Glyma.08g103900 ID=Glyma.08g103900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCTAGACGTTAATACTGAAGTATCAACTACTAATTGTTTTCGTTTTAGAATGTCGGGAAGTGTGGCAGACTGCCACGTAGGGAATGATGCTTCTCATCTCAAAGATCAACCTTATATTCTTCTCTACAGCAACTAAATTGAGAAATTCATAATTCATCTAAAGACACCCTGCAATTTGCTCTGTACTCCAACCATGGATGAGTTATTTTCAAATAGGGAGGGCTCATCAGCACAGAAGGGCCTTCTCAAAAGTCCAGCACTCCTTAAGTACATCTTGAAAGGAGTGGCTATCCCAAAGAGCACGAGCAATTGAAGCAACTCCGAGAGATAACAGTGCAGAAATACGGGGTTAAGAGTACGATGAGTGTACCGGTGGATGAGGCCCAATTCCTATCCATTCTTCTAAAAATCATGAACGCAAAGAAAACACTTGAAATTGGAGTATTCACGGGTTATTCTCTTCTTTCTACAGCTCTCGCTCTTCCTTCTGATGGCAAGATAATAGGAATTGATGTCGACAGACAAGCGTACGAGACTGGATTGCCCTTCATTCAGAAGGCAGGAGTGGAGCACAAAATTGACTTTATCCAAACGGATGCATTATCTGCCCTCCATGATCTTATAAATGGCAAACATGAAGAAACATTTGATTACGTGTTTGTGGACGCTGACAAGAAAAATTTTATAAAGTATCACGAGCTGCTGTTAAAATTGGTGAAGAAAGGTGGAATAATTGCATATGACAACACTTTATGGCTTGGTACGGTGGCTATGTCTGAGAACAAGGATAAAATTGAAGATAGCTTATGGCAAAATAGGGAGCCTACACTCGAATTCAACAACTATATAGCAAATGATACTCGCATTGAATCAACAATTCTGTCGATCGCGGATGGTGTAACTCTTTGCCGATGTCTTTAATCTCTTTAAAGGGAAGGGAGACATAACAACAATAATGAAGATGCATGGTTCAAATACACAAATATTATATAAATAAATTTGTCATTAAATTTATAGCTAAGCAAACCATAGAGCGAAGGCAGGATTGTTGAGAACATAGCAAATAAATTAGTTTGTAATGCTTTGCATGTTTTATACCTCTACTCATAAGAAAGAGTACTACAAGAAATATGAAGATGTTTAATAATGACCCAATAATGGGTGGTCGAATAAGTTCAACCTATCAATTTTGTTAGGCCATTAATTTTCTCCCTGTATGGCCTTTTAATTTTATAAGTTTCAAAATATCCAAATTACCTTCCTTTAGTCCATTTTATATGTTCTTTTGTCACCACTGCTGTGTCTCCAAGAGCTTCAACAGTCAAGTAGGTGAAGTTAGCAAACCCAGAAAGTGAATCAGTAAGTAGAAATTGTTGCAATAGAAGTATAGAACCC

>Glyma.08g103900.3 sequence-type=transcript locus=Glyma.08g103900 ID=Glyma.08g103900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCTAGACGTTAATACTGAAGTATCAACTACTAATTGTTTTCGTTTTAGAATGTCGGGAAGTGTGGCAGACTGCCACGTAGGGAATGATGCTTCTCATCTCAAAGATCAACCTTATATTCTTCTCTACAGCAACTAAATTGAGAAATTCATAATTCATCTAAAGACACCCTGCAATTTGCTCTGTACTCCAACCATGGATGAGTTATTTTCAAATAGGGAGGGCTCATCAGCACAGAAGGGCCTTCTCAAAAGTCCAGCACTCCTTAAGTACATCTTGAAAGGAGTGGCTATCCCAAAGAGCACGAGCAATTGAAGCAACTCCGAGAGATAACAGTGCAGAAATACGGGGTTAACAGGAGTACGATGAGTGTACCGGTGGATGAGGCCCAATTCCTATCCATTCTTCTAAAAATCATGAACGCAAAGAAAACACTTGAAATTGGAGTATTCACGGGTTATTCTCTTCTTTCTACAGCTCTCGCTCTTCCTTCTGATGGCAAGATAATAGGAATTGATGTCGACAGACAAGCGTACGAGACTGGATTGCCCTTCATTCAGAAGGCAGGAGTGGAGCACAAAATTGACTTTATCCAAACGGATGCATTATCTGCCCTCCATGATCTTATAAATGGCAAACATGAAGAAACATTTGATTACGTGTTTGTGGACGCTGACAAGAAAAATTTTATAAAGTATCACGAGCTGCTGTTAAAATTGGTGAAGAAAGGTGGAATAATTGCATATGACAACACTTTATGGCTTGGTACGGTGGCTATGTCTGAGAACAAGGATAAAATTGAAGATAGCTTATGGCAAAATAGGGAGCCTACACTCGAATTCAACAACTATATAGCAAATGATACTCGCATTGAATCAACAATTCTGTCGATCGCGGATGGTGTAACTCTTTGCCGATGTCTTTAATCTCTTTAAAGGGAAGGGAGACATAACAACAATAATGAAGATGCATGGTTCAAATACACAAATATTATATAAATAAATTTGTCATTAAATTTATAGCTAAGCAAACCATAGAGCGAAGGCAGGATTGTTGAGAACATAGCAAATAAATTAGTTTGTAATGCTTTGCATGTTTTATACCTCTACTCATAAGAAAGAGTACTACAAGAAATATGAAGATGTTTAATAATGACCCAATAATGGGTGGTCGAATAAGTTCAACCTATCAATTTTGTTAGGCCATTAATTTTCTCCCTGTATGGCCTTTTAATTTTATAAGTTTCAAAATATCCAAATTACCTTCCTTTAGTCCATTTTATATGTTCTTTTGTCACCACTGCTGTGTCTCCAAGAGCTTCAACAGTCAAGTAGGTGAAGTTAGCAAACCCAGAAAGTGAATCAGTAAGTAGAAATTGTTGCAATAGAAGTATAGAACCC
Coding sequences of Glyma.08g103900
>Glyma.08g103900.1 sequence-type=CDS polypeptide=Glyma.08g103900.1.p locus=Glyma.08g103900 ID=Glyma.08g103900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTATGGTAGCAGGAGTACGATGAGTGTACCGGTGGATGAGGCCCAATTCCTATCCATTCTTCTAAAAATCATGAACGCAAAGAAAACACTTGAAATTGGAGTATTCACGGGTTATTCTCTTCTTTCTACAGCTCTCGCTCTTCCTTCTGATGGCAAGATAATAGGAATTGATGTCGACAGACAAGCGTACGAGACTGGATTGCCCTTCATTCAGAAGGCAGGAGTGGAGCACAAAATTGACTTTATCCAAACGGATGCATTATCTGCCCTCCATGATCTTATAAATGGCAAACATGAAGAAACATTTGATTACGTGTTTGTGGACGCTGACAAGAAAAATTTTATAAAGTATCACGAGCTGCTGTTAAAATTGGTGAAGAAAGGTGGAATAATTGCATATGACAACACTTTATGGCTTGGTACGGTGGCTATGTCTGAGAACAAGGATAAAATTGAAGATAGCTTATGGCAAAATAGGGAGCCTACACTCGAATTCAACAACTATATAGCAAATGATACTCGCATTGAATCAACAATTCTGTCGATCGCGGATGGTGTAACTCTTTGCCGATGTCTTTAA

>Glyma.08g103900.2 sequence-type=CDS polypeptide=Glyma.08g103900.2.p locus=Glyma.08g103900 ID=Glyma.08g103900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTGTACCGGTGGATGAGGCCCAATTCCTATCCATTCTTCTAAAAATCATGAACGCAAAGAAAACACTTGAAATTGGAGTATTCACGGGTTATTCTCTTCTTTCTACAGCTCTCGCTCTTCCTTCTGATGGCAAGATAATAGGAATTGATGTCGACAGACAAGCGTACGAGACTGGATTGCCCTTCATTCAGAAGGCAGGAGTGGAGCACAAAATTGACTTTATCCAAACGGATGCATTATCTGCCCTCCATGATCTTATAAATGGCAAACATGAAGAAACATTTGATTACGTGTTTGTGGACGCTGACAAGAAAAATTTTATAAAGTATCACGAGCTGCTGTTAAAATTGGTGAAGAAAGGTGGAATAATTGCATATGACAACACTTTATGGCTTGGTACGGTGGCTATGTCTGAGAACAAGGATAAAATTGAAGATAGCTTATGGCAAAATAGGGAGCCTACACTCGAATTCAACAACTATATAGCAAATGATACTCGCATTGAATCAACAATTCTGTCGATCGCGGATGGTGTAACTCTTTGCCGATGTCTTTAA

>Glyma.08g103900.3 sequence-type=CDS polypeptide=Glyma.08g103900.3.p locus=Glyma.08g103900 ID=Glyma.08g103900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTGTACCGGTGGATGAGGCCCAATTCCTATCCATTCTTCTAAAAATCATGAACGCAAAGAAAACACTTGAAATTGGAGTATTCACGGGTTATTCTCTTCTTTCTACAGCTCTCGCTCTTCCTTCTGATGGCAAGATAATAGGAATTGATGTCGACAGACAAGCGTACGAGACTGGATTGCCCTTCATTCAGAAGGCAGGAGTGGAGCACAAAATTGACTTTATCCAAACGGATGCATTATCTGCCCTCCATGATCTTATAAATGGCAAACATGAAGAAACATTTGATTACGTGTTTGTGGACGCTGACAAGAAAAATTTTATAAAGTATCACGAGCTGCTGTTAAAATTGGTGAAGAAAGGTGGAATAATTGCATATGACAACACTTTATGGCTTGGTACGGTGGCTATGTCTGAGAACAAGGATAAAATTGAAGATAGCTTATGGCAAAATAGGGAGCCTACACTCGAATTCAACAACTATATAGCAAATGATACTCGCATTGAATCAACAATTCTGTCGATCGCGGATGGTGTAACTCTTTGCCGATGTCTTTAA
Predicted protein sequences of Glyma.08g103900
>Glyma.08g103900.1.p sequence-type=predicted peptide transcript=Glyma.08g103900.1 locus=Glyma.08g103900 ID=Glyma.08g103900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYGSRSTMSVPVDEAQFLSILLKIMNAKKTLEIGVFTGYSLLSTALALPSDGKIIGIDVDRQAYETGLPFIQKAGVEHKIDFIQTDALSALHDLINGKHEETFDYVFVDADKKNFIKYHELLLKLVKKGGIIAYDNTLWLGTVAMSENKDKIEDSLWQNREPTLEFNNYIANDTRIESTILSIADGVTLCRCL*

>Glyma.08g103900.2.p sequence-type=predicted peptide transcript=Glyma.08g103900.2 locus=Glyma.08g103900 ID=Glyma.08g103900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSVPVDEAQFLSILLKIMNAKKTLEIGVFTGYSLLSTALALPSDGKIIGIDVDRQAYETGLPFIQKAGVEHKIDFIQTDALSALHDLINGKHEETFDYVFVDADKKNFIKYHELLLKLVKKGGIIAYDNTLWLGTVAMSENKDKIEDSLWQNREPTLEFNNYIANDTRIESTILSIADGVTLCRCL*

>Glyma.08g103900.3.p sequence-type=predicted peptide transcript=Glyma.08g103900.3 locus=Glyma.08g103900 ID=Glyma.08g103900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSVPVDEAQFLSILLKIMNAKKTLEIGVFTGYSLLSTALALPSDGKIIGIDVDRQAYETGLPFIQKAGVEHKIDFIQTDALSALHDLINGKHEETFDYVFVDADKKNFIKYHELLLKLVKKGGIIAYDNTLWLGTVAMSENKDKIEDSLWQNREPTLEFNNYIANDTRIESTILSIADGVTLCRCL*






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