Glyma.08g103700

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Report for Sequence Feature Glyma.08g103700

Feature Type:	gene_model
Chromosome:	Gm08
Start:	7959250
stop:	7962513
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g103700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G67430.1	AT	Ribosomal protein L22p/L17e family protein	JGI	N/A	IEA
GO:0006412	GO-bp	translation	EnsemblGenomes	N/A	IEA
GO:0006412	GO-bp	translation	JGI	N/A	IEA
GO:0005622	GO-cc	intracellular	EnsemblGenomes	N/A	IEA
GO:0005840	GO-cc	ribosome	EnsemblGenomes	N/A	IEA
GO:0005840	GO-cc	ribosome	JGI	N/A	IEA
GO:0015934	GO-cc	large ribosomal subunit	EnsemblGenomes	N/A	IEA
GO:0003735	GO-mf	structural constituent of ribosome	EnsemblGenomes	N/A	IEA
GO:0003735	GO-mf	structural constituent of ribosome	JGI	N/A	IEA
KOG3353	KOG	60S ribosomal protein L22	JGI	N/A	IEA
PTHR11593	Panther	60S RIBOSOMAL PROTEIN L17	JGI	N/A	IEA
PF00237	PFAM	Ribosomal protein L22p/L17e	JGI	N/A	IEA

Expression Patterns of Glyma.08g103700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g103700 not represented in the dataset	Glyma.08g103700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.08g103700

Paralog	Evidence	Comments
Glyma.05g146800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g103700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g10910	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.08g103700

Limit To All Plant Sequences

>Glyma.08g103700.2 sequence-type=transcript locus=Glyma.08g103700 ID=Glyma.08g103700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAATTCTATTATATAAAGTTGGTCATTCCTCCTCCGGTGTTGCTGACAAGCCAATCCTTTGTGTAGGTGCTCAACCCTAGTAAGCCGCAATGGTGAAGTACTCAAGGGAGCCTGACAATCCAACTAAGTCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCTAAAAGGTACTTGGAAGATGTTCTTGCCCACAAGCAGGCAATTCCATTCAGACGTTTTTGTCGAGGTGTTGGAAGGACAGCCCAGGCTAAGAATAGACACTCTAATGGCCAAGGACGGTGGCCTGTCAAGTCAGCAAAATTCATTCTTGATTTGCTCAAAAATGCTGAGAGCAATGCTGAAGTGAAAGGTTTGGATGTTGATGCACTGTACATTTCGCATATCCAAGTCAATCAAGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCCTTATATGTCATCTCCGTGCCACATAGAGTTAATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGCCCGAGACTAAGTTAACAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGCGCTTCGTCATAGAATACAACTTAATTGTTTGAGGCACAATATTCCTAGATTATGTCAAGAGGAGAgttttgtttgtttaatttttgttatggtttggtatgagtttTATACTATGCTTCAAATTAATTTAAGTTATTCGAAAAACTTAGTTTGGATTTCTTTCGGTGTTTCCTTTGGATGGATATTTAAAAGTAGTTTCAAAAGAAATACTAAGTATTAGAAGATAAATCGATTGTTAAGTGGTACTGGATTTTTTTTTTCTTGTTTTCTT

Coding sequences of Glyma.08g103700

Limit To All Plant Sequences

>Glyma.08g103700.1 sequence-type=CDS polypeptide=Glyma.08g103700.1.p locus=Glyma.08g103700 ID=Glyma.08g103700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGAAGTACTCAAGGGAGCCTGACAATCCAACTAAGTCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGAATAGCCTGATGAAAAAAGCAGAGAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCTAAAAGGTACTTGGAAGATGTTCTTGCCCACAAGCAGGCAATTCCATTCAGACGTTTTTGTCGAGGTGTTGGAAGGACAGCCCAGGCTAAGAATAGACACTCTAATGGCCAAGGACGGTGGCCTGTCAAGTCAGCAAAATTCATTCTTGATTTGCTCAAAAATGCTGAGAGCAATGCTGAAGTGAAAGGTTTGGATGTTGATGCACTGTACATTTCGCATATCCAAGTCAATCAAGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCCTTATATGTCATCTCCGTGCCACATAGAGTTAATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGCCCGAGACTAAGTTAACAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGCGCTTCGTCATAG

>Glyma.08g103700.2 sequence-type=CDS polypeptide=Glyma.08g103700.2.p locus=Glyma.08g103700 ID=Glyma.08g103700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGAAGTACTCAAGGGAGCCTGACAATCCAACTAAGTCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTTAAGAACACAAGGGAAACTGCCTTTGCAATCAGGAAGTTGCCCTTGGTCAAGGCTAAAAGGTACTTGGAAGATGTTCTTGCCCACAAGCAGGCAATTCCATTCAGACGTTTTTGTCGAGGTGTTGGAAGGACAGCCCAGGCTAAGAATAGACACTCTAATGGCCAAGGACGGTGGCCTGTCAAGTCAGCAAAATTCATTCTTGATTTGCTCAAAAATGCTGAGAGCAATGCTGAAGTGAAAGGTTTGGATGTTGATGCACTGTACATTTCGCATATCCAAGTCAATCAAGCACAGAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCCTTATATGTCATCTCCGTGCCACATAGAGTTAATATTATCTGAAAAAGAAGAACCTGTGAAGAAGGAGCCCGAGACTAAGTTAACAACAAGCAAGAAATCCCAAGCTCTTCGAAGTGGCGCTTCGTCATAG

Predicted protein sequences of Glyma.08g103700

Limit To All Plant Sequences

>Glyma.08g103700.1.p sequence-type=predicted peptide transcript=Glyma.08g103700.1 locus=Glyma.08g103700 ID=Glyma.08g103700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVKYSREPDNPTKSCKARGADLRVHFKNSLMKKAENTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETKLTTSKKSQALRSGASS*

>Glyma.08g103700.2.p sequence-type=predicted peptide transcript=Glyma.08g103700.2 locus=Glyma.08g103700 ID=Glyma.08g103700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETKLTTSKKSQALRSGASS*

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