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Report for Sequence Feature Glyma.08g102000

Feature Type:gene_model
Chromosome:Gm08
Start:7828786
stop:7831334
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g102000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G04620.1AT Cation efflux family protein JGI N/AIEA
GO:0006812GO-bp cation transport EnsemblGenomesN/AIEA
GO:0006812GO-bp cation transport JGI N/AIEA
GO:0010043GO-bp response to zinc ion EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport JGI N/AIEA
GO:0061088GO-bp regulation of sequestering of zinc ion EnsemblGenomesN/AIEA
GO:0071577GO-bp zinc ion transmembrane transport EnsemblGenomesN/AIEA
GO:0098655GO-bp cation transmembrane transport EnsemblGenomesN/AIEA
GO:0005794GO-cc Golgi apparatus EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0005385GO-mf zinc ion transmembrane transporter activity EnsemblGenomesN/AIEA
GO:0008324GO-mf cation transmembrane transporter activity EnsemblGenomesN/AIEA
GO:0008324GO-mf cation transmembrane transporter activity JGI N/AIEA
KOG1483 KOG Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) JGI N/AIEA
PTHR11562Panther CATION EFFLUX PROTEIN/ ZINC TRANSPORTER JGI N/AIEA
PF01545PFAM Cation efflux family JGI N/AIEA

Proteins Associated with Glyma.08g102000
LocusGene SymbolProtein Name
CDF1 cation diffusion facilitator 1

Expression Patterns of Glyma.08g102000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g102000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g10750 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g102000
>Glyma.08g102000.1 sequence-type=CDS polypeptide=Glyma.08g102000.1.p locus=Glyma.08g102000 ID=Glyma.08g102000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGATAACGATCACTCCCACTCCCACCCTCACCACCACCACCACCACCACCGTCCTCATCGCCTCTCAGTGCCGCCGCGCAGCACCACATTCGGCGGCACTCCGGGAACCCAGCCCGCCTTCTGGTACTCCTCAAGCACAACCCCAACCCCAACCCCCTCCAAAACCCGCCGTTCATTGTCCTTCCCGAAATCGAAATCGAAATCGAGATCCTCAGTCTTCCTCCTCCTCTTCTTCTCCCTCCGCTCCCTCTACTCCCTCCTTCCCTTCCTCCGCTCCTCTCCTTCCTTCTCCCTCTTCCCCTTCTCCTTCCTCGTCTCCCTCCTCTCCTTCTCCCTCACCCTCTCCTTCTCCCTCTTCTCTTCTTCCTCCACCTCCTCCAAAGACCCCTTTCTCCACCACAAACCCAAACACCCTCTTCTCTCACCTTCCCTCACACCCTCCCAGCAGAGAATCTTGGTCACCAAATCAATCCTCCTTGCCCTCGTCTTCCTCCTCCGCTTCCAGGCCCTCCGCTACTGCGGCACCGCCTCCATGATCCTCGCCGAGTTAATGGGCTCCATCGCTGCCCGGCCCAGAAACCCTTACAGGCACAACCTCCGCGGCTTCCTCTCCCTCTCCCTCGGCCTCCTCCTGCTCTCCTTCGGCTGGGACCGGATCGAATGCTTCCCGTTCTCTCCCGCTTGCCTCACCCGCCGGATTTGGCCCTTGATCCTCCCTTTCGCCTCCGGCTTTCTCGCCCACTACCGGCTCGTGGACTCCGGGACTACTCTCAAACAGCTCGGCCGCAAACGGGTTCGGTTAATTACTCTCCTTTTCACTACTGTTATTCTATTTGTTCCCGCAGTTGTTAGTTTCTTCGTGTTTGAGGCAGAAGAAGATAGTGTTGCCTTTGGGAATTTGGCGTGGCCATTGGTGAATACTGTTGTTTTCGGTGTGCTTTTGAGTGAGAGTTATAGTGGTGATGATAATGATGATGATGATAGTTTCGCGAGTTCGAGGGAGTTTCTGGTTACTTTTGTTTGCACTTTGGTGTTGGAGCTTTTTTATTTCCCTGAACTTTCCCTCTGGGGTTTGTTGCTTTGTGGTTTGTTGCTATATGTTGGTGTTAGAGACTTGGATCCTTTTCATTCTTCCAATGAAGGGGAGTTCTCGGGTGACATGATTATGAAGCCTATCAGACATGTTTTGAGCGAGAGGAAGTCGCGGAAGATTGCGCTTTTTCTTCTAATCAATGCTGGGTATATGGTTGTGGAGTTTGCTGCTGGGTTCATGAGCAATAGTCTTGGCCTGATATCGGATGCGTGCCACATGTTGTTTGATTGTGCTGCTTTGGCCATTGGGTTGTATGCATCGTATATATCTCGTTTGCCGGCAAATAATCACTATAACTATGGTAGAGGAAGATTTGAGGTTTTATCAGGGTATACTAATGCTGTGTTTCTGGTTCTTGTGGGAGCACTCATAGTGGTGGAGTCCTTTGAGAGGATATTGGATCCTCAGGAGATATCAACTAATAGCTTGTTGGTTGTCTCCATAGGAGGGCTTGTGGTCAATGTCATTGGCTTGATATTCTTTCATGAGGAGCATCATCATGCTCATGGCCATGTATTATCTGGATCATCATGCTCCCATTCGCACACACACACGGAGTCGCATAGTCACCACACCCACCATCATCATGATCATGATCATGATCATGATCATCTGCATAGCCATGGTCACGAAACAACAATCCATGGAAGCAATCAAGAATATATATCAGTTTCAAGTGATTGCCGAGACGATTCATGCCCTGGTGATCATGGCCATCATCATAATCATAACCACTGTAGTCATGAGAGGAAGCATCATGGTGAGTGTCATGATCATGAAGACAAACACAGCATTCCGAGCTTTAAGCATCATGATGCTGCCGCCCACTGCCATGACCATGGTGAACATCATGATCAAACTGGGCACTCTTGTCATGAAGATGCTCCACTTGTTCGTAAAGAGCATGACCATCGCCATATTGATCACAATATGGAAGGGATATTTTTGCATGTTCTTGCTGACACCATGGGGAGTGTTGGTGTTGTTATATCTACCCTGTTGATTAACAGAAGTTTTGCTCCAAGAGTGCCAAGGGCGCATGAGCATGAGCTGAAGGATGCCTTAATTAATGTTTCGAAGATAAGGGGTGTTTATGGCATTCAAAAGTTTCATTCCTGGAACTTCACAAACACAGATGTAGTTGGTACGATGCATCTTCACGTGTCAACAGATACAGACAAGACATCCGCCAAGTCGCAGGTTTTGCATCTGTTACGTAATGCTGGAATCAAGGATGTAACCTTGCAGGTGGAATGTGTTGGATAA
Predicted protein sequences of Glyma.08g102000
>Glyma.08g102000.1.p sequence-type=predicted peptide transcript=Glyma.08g102000.1 locus=Glyma.08g102000 ID=Glyma.08g102000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADNDHSHSHPHHHHHHHRPHRLSVPPRSTTFGGTPGTQPAFWYSSSTTPTPTPSKTRRSLSFPKSKSKSRSSVFLLLFFSLRSLYSLLPFLRSSPSFSLFPFSFLVSLLSFSLTLSFSLFSSSSTSSKDPFLHHKPKHPLLSPSLTPSQQRILVTKSILLALVFLLRFQALRYCGTASMILAELMGSIAARPRNPYRHNLRGFLSLSLGLLLLSFGWDRIECFPFSPACLTRRIWPLILPFASGFLAHYRLVDSGTTLKQLGRKRVRLITLLFTTVILFVPAVVSFFVFEAEEDSVAFGNLAWPLVNTVVFGVLLSESYSGDDNDDDDSFASSREFLVTFVCTLVLELFYFPELSLWGLLLCGLLLYVGVRDLDPFHSSNEGEFSGDMIMKPIRHVLSERKSRKIALFLLINAGYMVVEFAAGFMSNSLGLISDACHMLFDCAALAIGLYASYISRLPANNHYNYGRGRFEVLSGYTNAVFLVLVGALIVVESFERILDPQEISTNSLLVVSIGGLVVNVIGLIFFHEEHHHAHGHVLSGSSCSHSHTHTESHSHHTHHHHDHDHDHDHLHSHGHETTIHGSNQEYISVSSDCRDDSCPGDHGHHHNHNHCSHERKHHGECHDHEDKHSIPSFKHHDAAAHCHDHGEHHDQTGHSCHEDAPLVRKEHDHRHIDHNMEGIFLHVLADTMGSVGVVISTLLINRSFAPRVPRAHEHELKDALINVSKIRGVYGIQKFHSWNFTNTDVVGTMHLHVSTDTDKTSAKSQVLHLLRNAGIKDVTLQVECVG*






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