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Report for Sequence Feature Glyma.08g096200

Feature Type:gene_model
Chromosome:Gm08
Start:7366736
stop:7369385
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g096200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G30100.1AT nine-cis-epoxycarotenoid dioxygenase 5 JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0016702GO-mf oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0051213GO-mf dioxygenase activity EnsemblGenomesN/AIEA
KOG1285 KOG Beta, beta-carotene 15,15'-dioxygenase and related enzymes JGI N/AIEA
PTHR10543Panther BETA-CAROTENE DIOXYGENASE JGI N/AIEA
PTHR10543:SF1Panther JGI N/AIEA
PF03055PFAM Retinal pigment epithelial membrane protein JGI N/AIEA
PWY-695SoyCyc9 abscisic acid biosynthesis Plant Metabolic Network ISS
GN7V-48923SoyCyc9-rxn 9-cis-epoxycarotenoid dioxygenase Plant Metabolic Network ISS

Proteins Associated with Glyma.08g096200
LocusGene SymbolProtein Name
NCED2 9-cis-epoxycarotenoid dioxygenase 2

Expression Patterns of Glyma.08g096200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g096200
ParalogEvidenceComments
Glyma.05g140900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g096200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g10190 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g096200
>Glyma.08g096200.1 sequence-type=CDS polypeptide=Glyma.08g096200.1.p locus=Glyma.08g096200 ID=Glyma.08g096200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATCATGGCAGCACTCAATTCAAGCACTTGTGCCAAACCTCAATTCCCTCACCCTCTCTCCTCCTCTTTCTCTTCTTCTTCATCATTAACAAGAGATTTGGGCTTCCCCACAAGGTTTCAGAAGAAGCCCATTAGAAAGGTGGTGGATTGTGCTCTACACTCCCCCCCAGTGATCCATTTCCCAAACCAGCCCTACAACAAACCTGAAATTACCAAAGAACCCACCACCTCCACCGCGGAAAGGCCTCAGTGGAACCCATTCCAAAAAGCCGCAGCAAAGGCCCTCGACATGTTCGAGAGCGCGTTGCTCTCACGCGAGCTCAACCAACCCTTTCCCAAAACCACTGACCCACGCGTCCAAATTGCCGGTAACTTCGCCCCCGTTCCGGAACACCCCGTCGAACATTCTCTCCCCGTTATTGGCACAATCCCCGACGCCATTAACGGCGTCTACCTCCGTAACGGCGCCAACCCATTGTTCAAGCCAAAAGCGGGCCACCACCTCTTCGACGGCGACGGAATGGTCCACGCCGTTAAATTCAATGACGGCACCGCCAGCTACGCGTGCCGCTTCACCGAAACGCAGCGTCTCATGCAGGAGCGCAAATTGGGAAAACCTGTGTTTCCCAAGGCAATCGGCGAACTCCACGGCCATTCCGGCATCGCGAGGTTGATGCTGTTCTACGCAAGAGGCTTGTGCGGCATCGTCGACCACCGCAGAGGCGCCGGCGCAGCCAACGCCGGCCTCGTCTTCTTCAACGGAAAACTCCTCGCCATGTCGGAGGATGATTTCCCCTACGAACTCCGAATCACCGCCTCCGGCGACCTCGAAACAATTGGCCGCTACAGCTTTCACGGCCAGCTCAATTCCTCCATGATCGCGCATCCGAAGGTCGATCCTGTCTCCGGAGAGCTTTTTACCCTAAGCTACGACGTCACGAGCAAGATCCTCAAATACTTCCATTTCTCGCCCGAGGACGAGAGGAAGTCGCCGGACATAGAAATTCCCCTTGACGCGCCGACGATGACGCACGACTTCGCGATCACGGAGAATTTCGTGGTGATCCCGGACCAGCAGGTGGTGTTCAAGCTCGGCGAAATGATCAAAGGAGGATCGCCGGTGATCTACGACGGCGAGAAGAAATCGCGGTTCGGAATACTGCCAAAGTACGCTTCCGACGCGTCGAGCATCGTGTGGGTGGACTCGCCAGACACGTTCTTCTTCCACTTCTGGAACGCGTGGGAGGAACGCGACAAAGACGAAGTGGTGGTAATAGGTTCGTGCATGACACCACCAGATTCAATATTCAATGACAGAGAAGAGAGACTGAAGAGCGTTTTAACAGAAGTAAGGCTGAACATGAGAAGCGGGAAGGCGAGGAGGAGGGTGCTGGTGGAGGAAATGAACCTGGAGGCAGGGATGGTGAACAGGAAAAGGTTGGGGAGAAAAACACGGTTCGCATATTTGTGCATAGCGGAACCGTGGCCGAAGGTGTCGGGGGTGGCGAAGGTGGACCTGGAGAGTGGGGAAGTGAAGAGGCACGAGTACGGAGAGAGAAGGTTCGGTGGAGAGCCATTCTTCTTGCCAACACGTGGAGGGAATGGGAATGAGGATGAAGGGTACGTGATGGCTTTTGTGCATGACGAGATGACGTGGCAGTCCGAGTTGCAGATTCTGAATGCACTTGATTTGAAGTTGGAGGCCACTGTCATGCTGCCTTCAAGAGTGCCCTATGGCTTCCATGGCACGTTTGTGGAGGCTCATTGA
Predicted protein sequences of Glyma.08g096200
>Glyma.08g096200.1.p sequence-type=predicted peptide transcript=Glyma.08g096200.1 locus=Glyma.08g096200 ID=Glyma.08g096200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIMAALNSSTCAKPQFPHPLSSSFSSSSSLTRDLGFPTRFQKKPIRKVVDCALHSPPVIHFPNQPYNKPEITKEPTTSTAERPQWNPFQKAAAKALDMFESALLSRELNQPFPKTTDPRVQIAGNFAPVPEHPVEHSLPVIGTIPDAINGVYLRNGANPLFKPKAGHHLFDGDGMVHAVKFNDGTASYACRFTETQRLMQERKLGKPVFPKAIGELHGHSGIARLMLFYARGLCGIVDHRRGAGAANAGLVFFNGKLLAMSEDDFPYELRITASGDLETIGRYSFHGQLNSSMIAHPKVDPVSGELFTLSYDVTSKILKYFHFSPEDERKSPDIEIPLDAPTMTHDFAITENFVVIPDQQVVFKLGEMIKGGSPVIYDGEKKSRFGILPKYASDASSIVWVDSPDTFFFHFWNAWEERDKDEVVVIGSCMTPPDSIFNDREERLKSVLTEVRLNMRSGKARRRVLVEEMNLEAGMVNRKRLGRKTRFAYLCIAEPWPKVSGVAKVDLESGEVKRHEYGERRFGGEPFFLPTRGGNGNEDEGYVMAFVHDEMTWQSELQILNALDLKLEATVMLPSRVPYGFHGTFVEAH*






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