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Report for Sequence Feature Glyma.08g093400

Feature Type:gene_model
Chromosome:Gm08
Start:7084753
stop:7087202
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g093400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G38460.1AT geranylgeranyl reductase JGI N/AIEA
GO:0008299GO-bp isoprenoid biosynthetic process EnsemblGenomesN/AIEA
GO:0008299GO-bp isoprenoid biosynthetic process JGI N/AIEA
GO:0043693GO-bp monoterpene biosynthetic process EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0042651GO-cc thylakoid membrane EnsemblGenomesN/AIEA
GO:0004659GO-mf prenyltransferase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
KOG0776 KOG Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase JGI N/AIEA
PTHR12001Panther GERANYLGERANYL PYROPHOSPHATE SYNTHASE JGI N/AIEA
PTHR12001:SF8Panther JGI N/AIEA
PF00348PFAM Polyprenyl synthetase JGI N/AIEA
PWY-5120SoyCyc9 geranylgeranyl diphosphate biosynthesis Plant Metabolic Network ISS
PWY-5121SoyCyc9 superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) Plant Metabolic Network ISS
PWY-5863SoyCyc9 superpathway of phylloquinol biosynthesis Plant Metabolic Network ISS
PWY-5910SoyCyc9 superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) Plant Metabolic Network ISS
GN7V-47377SoyCyc9-rxn geranylgeranyl diphosphate synthase Plant Metabolic Network ISS

Expression Patterns of Glyma.08g093400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g093400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g09890 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g093400
>Glyma.08g093400.1 sequence-type=CDS polypeptide=Glyma.08g093400.1.p locus=Glyma.08g093400 ID=Glyma.08g093400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCCTTTTGCTTTTGCAACATTGCCCTCTTCTCACATCTGCCGCCTCCCAAAGCCCACAAACTTGAAGTTTCGAGTTCGCTGCTCTACTGCCGCGTCTTCTCCTTCTTCGGTTTCCACTAGATCAAAAGCTGCTGGCTTTGATTTGAAGACATACTGGGCCAACCTAATGGTGCAGATCAATCAGAAGCTGGACGAAGCTATCCCGGTTCAGTTTCCTCCGCAGATATATGAAGCTATGAGGTATTCAGTCCTTGCCAAAGGTGCCAAGCGAGCCCCACCTGTTATGTGCATCTCTGCCTGTGAACTCTTTGGTGGCAGCCGCCTTGCCGCCTTTCCCACTGCCTGTGCCCTTGAAATGGTTCATGCAGCTTCATTGATACACGATGATCTTCCCTGCATGGATGACTCCCCCTCACGCCGTGGTCAGCCTTCAAACCATACCATCTATGGTGTTGACATGGCAATTCTTGCGGGCGATGCACTCTTTCCCCTTGGATTTCGACACATTGTTTCACAAACTCCATCAGACCTTGTGCCTGAGTCGCACCTCCTTCGTGTGATTGCCGAGATAGCCCGCTCTGTAGGATCCACTGGAATGGCTGCAGGGCAGTTCCTGGACCTTGAAGGAGGACCCAATGCAGTTGGATTTATACAAGAAAAAAAGTTTGGTGAAATGGGGGAGTCTTCTGCAGTGTGTGGAGGATTCTTGGCTGGAGCTGAAGATGATGAGATAGAGAGACTGAGGAGGTATGGGAGAGCTGTTGGGGTATTGTATGCAGTTGTGGATGATATTATAGAAGAGAGATTGAAAGTTGAGGGAGATGGTGACAGGAAAAACAAGGGTAAGAGTTATGCAGAGGTTTATGGAGTTGAAAAGGCAATAGAAAAAGCTGAAGAGCTCAGAGCAAAGGCTAAAGAAGAATTGGATGGATTTGAGAAGCATGGGGAACGGGTCTTTCCTCTCTACAGTTTTGTGGATTATGCTTTTGATAGAAGTTTCAGTGTTGATGATGCCAGTGGATAA
Predicted protein sequences of Glyma.08g093400
>Glyma.08g093400.1.p sequence-type=predicted peptide transcript=Glyma.08g093400.1 locus=Glyma.08g093400 ID=Glyma.08g093400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAPFAFATLPSSHICRLPKPTNLKFRVRCSTAASSPSSVSTRSKAAGFDLKTYWANLMVQINQKLDEAIPVQFPPQIYEAMRYSVLAKGAKRAPPVMCISACELFGGSRLAAFPTACALEMVHAASLIHDDLPCMDDSPSRRGQPSNHTIYGVDMAILAGDALFPLGFRHIVSQTPSDLVPESHLLRVIAEIARSVGSTGMAAGQFLDLEGGPNAVGFIQEKKFGEMGESSAVCGGFLAGAEDDEIERLRRYGRAVGVLYAVVDDIIEERLKVEGDGDRKNKGKSYAEVYGVEKAIEKAEELRAKAKEELDGFEKHGERVFPLYSFVDYAFDRSFSVDDASG*






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