SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.08g088900

Feature Type:gene_model
Chromosome:Gm08
Start:6715109
stop:6722244
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g088900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G44740.2AT Y-family DNA polymerase H JGI N/AIEA
GO:0006281GO-bp DNA repair EnsemblGenomesN/AIEA
GO:0006281GO-bp DNA repair JGI N/AIEA
GO:0003684GO-mf damaged DNA binding EnsemblGenomesN/AIEA
GO:0003684GO-mf damaged DNA binding JGI N/AIEA
GO:0003887GO-mf DNA-directed DNA polymerase activity JGI N/AIEA
KOG2095 KOG DNA polymerase iota/DNA damage inducible protein JGI N/AIEA
PTHR11076Panther DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER JGI N/AIEA
PTHR11076:SF11Panther DNA POLYMERASE ETA JGI N/AIEA
PF00817PFAM impB/mucB/samB family JGI N/AIEA
PF11799PFAM impB/mucB/samB family C-terminal domain JGI N/AIEA

Expression Patterns of Glyma.08g088900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g088900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g09400 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g088900
>Glyma.08g088900.2 sequence-type=transcript locus=Glyma.08g088900 ID=Glyma.08g088900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAAGATTACCGAATCTCTTGGGGTTGATAAAAAGCGTACCAGCTTTCCGACCCATTATCCTTAAACAACTTCACATCCATGATACATCCACACACAAAAAAATGTCAATTTTTAATTTACACAGATAAATAAACATGCCATAATTGAAAATTGTGATGTACTTTTAATAAGAAATGTAAAATTATATATCAAACACTAAGAACAGTCTAATGCGTTGCTCATGTGATCAGATCACCAAAACAAAACAAGTTAAATACTGCAGTAGTGGCTAGTGCCCACTCCTAGTACAAAACACGAGACATGAACACTCTAAAATGGATCGATAATCGAAATTAAGATCAAAATCACTCAAGAGATCCTCATTTCATCCATTTTTTTCCTTCATAAATCATATTAGCAAGTGAAGTGTCACAAACAGAGAGTCAAATATGACCTTGAACGTGGTGGAGAAGAGCTCCGGACGCGGCGGAGAAGAGCTCTGGTCGCGGTGGTTGGTTGAAGAAGACGCAGTGATGATTCCACCGAAGGGTGTTTTCCTCGATTCGCAGTGTTAGGGTTACAGAAAGGTTTGTTTTGGGGCTTGGTTTTTATGGGCCTAGGTTCTTAGAAGCCCAAAATGAAAAAAAATGAAACTTGACCCAAATCAAAATATGATGAACACATAAACAAAAGTAATAAATGAAAATAATTATAAAGTGTGACTGTGATGTGAGTGTGGTGCAGAGGGAAAAAGGGGAAAAACAGATTTGGAGGGAAAAGAAGAGAAGAGGAGATGCCGGTGGCGAGGCGAGAGACGTGCGATGGAAGAGTGATTGCTCATGTAGACATGGATTGCTTCTATGTTCAAGTTCAATGCGAGGGGATGAAGCCAAGGAGGCATGCCCGCAAATTCAACTGGTCCAAGTCCCGGTGGCGCGTGGTAAGGCTGATCTCAACTCGTACAGGAATGCGGGTTCAGAGGTTGTTTCGGTTCTTTCACAGAAGGGCCGTTGCGAAAGGGCTTCGATTGATGAGGTATATCTTGATCTAACCCATGCTGCTGAAACCATGTTGATGGAAACTCCTCTGGATAGCATGCAAGACTTTGAGGATGAAGTTCTCAAGTCACATGTTTTGGGTTTGGAAATTAAGGATGGAAGTGACGCCAAAGATGAAGTTAGGAAGTGGCTTTGCAGGAGTGATGCTAGTTACCAAGATAAGCTATTAGCTTGTGGGGCTCTCATTGTGTGTGACCTCAGGATGAAGGTGCTGAAAGAGACAGAATTCACATGCTCTGCTGGTATTGCTCATAATAAGATGCTGGCTAAACTTGCAAGTGCTATGAACAAACCTGCACAACAAACAGTTGTGCCACAATCATCTGTTGAAGGGTTGCTTGCTTCTTTGCCAATAAAGAAAATGAAACACCTTGGGGGAAAGCTGGGGAGTTCCTTACAAAGTGATCTTGGTGTCAACACTGTTGGTGATCTGCTTCAGTTTTCAGAGGAGAAGTTACAACAGTGGTATGGGATCAATACTGGTACTTGGTTGTGGAATATTGCTAGAGGAATCAGTGGGGAAGAAGTTGAGGGGCGACTACTTCCAAAGAGCCATGGTTCTGGCAAGACATTTCCTGGGCCTCAGGCTTTGAAGACCGTTGATTCTGTTCAACACTGGCTTAATCAATTGTGTGAAGAGCTGAACGAACGCCTTCACTCTGACCTTGATCAAAACAAACGGATTGCACAGACACTGACTCTACATGCTAGAGCATATAAGACAGGGGATTCAGATTCTCATAGAAAGTTTCCTTCTAAATCTTGTCCTTTAAGGTATGGGACTAGAAAGATTCAAGAGGATGCCCTAATTCTATTTCAAGCTGGGTTACGTGATTTTTTGGGCTTCTACAACTGTAAGGCTCATGGAAACGAAAATAACAACTGGGGAGTAACATCACTTTCTGTTTCTGCAAGTAAACTTGTGTCCATACCATCTGGGACACATTCAATTGTTAAATACTTTGGAGGGTCATTTCCATCCAGTTCTACATCAAATCAATCGCTGGATGTTGTGATTGATGAAGCTGCTCCATCCTCGCCTTCAGGAAGTGGAAATTGTTCAGGATTGGTTCCCAATGAATTTGAGCTTGAATATCCTGAAGACACAGGAATGAAAGATTCAAAGGCTTGTTTGGATCAACAGGATCCGTTGTGTCATTTATCCTGTAAAGCAGATGGCTTGACTGAAGAATCCTCCCTCGTGTCACCCTCAGGAAGCGAAGACAGAATCCTGCACAATGAGCCACATAGAGATTTACCTGCAACAGATCTTAGGCGTGTTTCGAATATCTCTAGTTTGAAAGCAGTTGGGAAGAAAAAGACAGCAGGAAAGAAGCTTCAAGGGAATTGTTCAATTGTACATTTCTTCAATAATTACCATAATTCCCAGTCTTCATTGGAGCAGAAGAATGTCAAAATATCATCATCACTTGGATCTCACTCTGCTGATAATAGTCATTCAACTTGTATTCAAGTTGAGATGCCTGCTGAGCACCCTCATGAAGAGTTTGATACAAACAAGAGTCGATGTAGCGTAGGTAATATGCCACAAGGAAGGCAAGATTGGAGTTATAACATCAATGAGATTGACCCCTCTATCATCAATGAATTACCACCAGAAATTCAGCAAGAGTTTCAAATCTGGCTTAGGCCGCATAAGCGGCCTAATGTGGCTAAACGAGGTTCTAGTATTACTCACTATTTCTCACCTGACAAAAGTAGATAAAATGATTATTGACTTTGGTTTATTGTACATATTAGTCTGATTTTTTTAAGAAATATGTAAGGTAGCTGATTTGTGATTTGGCTATTTGGTTGAGACATTTTATGGTTTTTTAAGTATGATGCTCCATGTAAGGTTTTTATGTAGATAATGCATATCATTATATCCGACCGAATTCAACAAAAAATTGCTAGTGCATGTTTGGTTTTAATTCTGTGATGTAAAAAATCAAAGTGG
Coding sequences of Glyma.08g088900
>Glyma.08g088900.1 sequence-type=CDS polypeptide=Glyma.08g088900.1.p locus=Glyma.08g088900 ID=Glyma.08g088900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCGGTGGCGAGGCGAGAGACGTGCGATGGAAGAGTGATTGCTCATGTAGACATGGATTGCTTCTATGTTCAAGTGGAACAGAGAAAGCAACCAAATTTAAGAGGCTTGCCCTCTGCAGTCATACAGTACAACTCCTACAAAGGTGGAGCCCTCATTGCTGTTAGCTATGAGGCTCGCCGATGTGGCGTCAAACGTTCAATGCGAGGGGATGAAGCCAAGGAGGCATGCCCGCAAATTCAACTGGTCCAAGTCCCGGTGGCGCGTGGTAAGGCTGATCTCAACTCGTACAGGAATGCGGGTTCAGAGGTTGTTTCGGTTCTTTCACAGAAGGGCCGTTGCGAAAGGGCTTCGATTGATGAGGTATATCTTGATCTAACCCATGCTGCTGAAACCATGTTGATGGAAACTCCTCTGGATAGCATGCAAGACTTTGAGGATGAAGTTCTCAAGTCACATGTTTTGGGTTTGGAAATTAAGGATGGAAGTGACGCCAAAGATGAAGTTAGGAAGTGGCTTTGCAGGAGTGATGCTAGTTACCAAGATAAGCTATTAGCTTGTGGGGCTCTCATTGTGTGTGACCTCAGGATGAAGGTGCTGAAAGAGACAGAATTCACATGCTCTGCTGGTATTGCTCATAATAAGATGCTGGCTAAACTTGCAAGTGCTATGAACAAACCTGCACAACAAACAGTTGTGCCACAATCATCTGTTGAAGGGTTGCTTGCTTCTTTGCCAATAAAGAAAATGAAACACCTTGGGGGAAAGCTGGGGAGTTCCTTACAAAGTGATCTTGGTGTCAACACTGTTGGTGATCTGCTTCAGTTTTCAGAGGAGAAGTTACAACAGTGGTATGGGATCAATACTGGTACTTGGTTGTGGAATATTGCTAGAGGAATCAGTGGGGAAGAAGTTGAGGGGCGACTACTTCCAAAGAGCCATGGTTCTGGCAAGACATTTCCTGGGCCTCAGGCTTTGAAGACCGTTGATTCTGTTCAACACTGGCTTAATCAATTGTGTGAAGAGCTGAACGAACGCCTTCACTCTGACCTTGATCAAAACAAACGGATTGCACAGACACTGACTCTACATGCTAGAGCATATAAGACAGGGGATTCAGATTCTCATAGAAAGTTTCCTTCTAAATCTTGTCCTTTAAGGTATGGGACTAGAAAGATTCAAGAGGATGCCCTAATTCTATTTCAAGCTGGGTTACGTGATTTTTTGGGCTTCTACAACTGTAAGGCTCATGGAAACGAAAATAACAACTGGGGAGTAACATCACTTTCTGTTTCTGCAAGTAAACTTGTGTCCATACCATCTGGGACACATTCAATTGTTAAATACTTTGGAGGGTCATTTCCATCCAGTTCTACATCAAATCAATCGCTGGATGTTGTGATTGATGAAGCTGCTCCATCCTCGCCTTCAGGAAGTGGAAATTGTTCAGGATTGGTTCCCAATGAATTTGAGCTTGAATATCCTGAAGACACAGGAATGAAAGATTCAAAGGCTTGTTTGGATCAACAGGATCCGTTGTGTCATTTATCCTGTAAAGCAGATGGCTTGACTGAAGAATCCTCCCTCGTGTCACCCTCAGGAAGCGAAGACAGAATCCTGCACAATGAGCCACATAGAGATTTACCTGCAACAGATCTTAGGCGTGTTTCGAATATCTCTAGTTTGAAAGCAGTTGGGAAGAAAAAGACAGCAGGAAAGAAGCTTCAAGGGAATTGTTCAATTGTACATTTCTTCAATAATTACCATAATTCCCAGTCTTCATTGGAGCAGAAGAATGTCAAAATATCATCATCACTTGGATCTCACTCTGCTGATAATAGTCATTCAACTTGTATTCAAGTTGAGATGCCTGCTGAGCACCCTCATGAAGAGTTTGATACAAACAAGAGTCGATGTAGCGTAGGTAATATGCCACAAGGAAGGCAAGATTGGAGTTATAACATCAATGAGATTGACCCCTCTATCATCAATGAATTACCACCAGAAATTCAGCAAGAGTTTCAAATCTGGCTTAGGCCGCATAAGCGGCCTAATGTGGCTAAACGAGGTTCTAGTATTACTCACTATTTCTCACCTGACAAAAGTAGATAA

>Glyma.08g088900.2 sequence-type=CDS polypeptide=Glyma.08g088900.2.p locus=Glyma.08g088900 ID=Glyma.08g088900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAATAATTATAAAGTGTGACTGTGATGTGAGTGTGGTGCAGAGGGAAAAAGGGGAAAAACAGATTTGGAGGGAAAAGAAGAGAAGAGGAGATGCCGGTGGCGAGGCGAGAGACGTGCGATGGAAGAGTGATTGCTCATGTAGACATGGATTGCTTCTATGTTCAAGTTCAATGCGAGGGGATGAAGCCAAGGAGGCATGCCCGCAAATTCAACTGGTCCAAGTCCCGGTGGCGCGTGGTAAGGCTGATCTCAACTCGTACAGGAATGCGGGTTCAGAGGTTGTTTCGGTTCTTTCACAGAAGGGCCGTTGCGAAAGGGCTTCGATTGATGAGGTATATCTTGATCTAACCCATGCTGCTGAAACCATGTTGATGGAAACTCCTCTGGATAGCATGCAAGACTTTGAGGATGAAGTTCTCAAGTCACATGTTTTGGGTTTGGAAATTAAGGATGGAAGTGACGCCAAAGATGAAGTTAGGAAGTGGCTTTGCAGGAGTGATGCTAGTTACCAAGATAAGCTATTAGCTTGTGGGGCTCTCATTGTGTGTGACCTCAGGATGAAGGTGCTGAAAGAGACAGAATTCACATGCTCTGCTGGTATTGCTCATAATAAGATGCTGGCTAAACTTGCAAGTGCTATGAACAAACCTGCACAACAAACAGTTGTGCCACAATCATCTGTTGAAGGGTTGCTTGCTTCTTTGCCAATAAAGAAAATGAAACACCTTGGGGGAAAGCTGGGGAGTTCCTTACAAAGTGATCTTGGTGTCAACACTGTTGGTGATCTGCTTCAGTTTTCAGAGGAGAAGTTACAACAGTGGTATGGGATCAATACTGGTACTTGGTTGTGGAATATTGCTAGAGGAATCAGTGGGGAAGAAGTTGAGGGGCGACTACTTCCAAAGAGCCATGGTTCTGGCAAGACATTTCCTGGGCCTCAGGCTTTGAAGACCGTTGATTCTGTTCAACACTGGCTTAATCAATTGTGTGAAGAGCTGAACGAACGCCTTCACTCTGACCTTGATCAAAACAAACGGATTGCACAGACACTGACTCTACATGCTAGAGCATATAAGACAGGGGATTCAGATTCTCATAGAAAGTTTCCTTCTAAATCTTGTCCTTTAAGGTATGGGACTAGAAAGATTCAAGAGGATGCCCTAATTCTATTTCAAGCTGGGTTACGTGATTTTTTGGGCTTCTACAACTGTAAGGCTCATGGAAACGAAAATAACAACTGGGGAGTAACATCACTTTCTGTTTCTGCAAGTAAACTTGTGTCCATACCATCTGGGACACATTCAATTGTTAAATACTTTGGAGGGTCATTTCCATCCAGTTCTACATCAAATCAATCGCTGGATGTTGTGATTGATGAAGCTGCTCCATCCTCGCCTTCAGGAAGTGGAAATTGTTCAGGATTGGTTCCCAATGAATTTGAGCTTGAATATCCTGAAGACACAGGAATGAAAGATTCAAAGGCTTGTTTGGATCAACAGGATCCGTTGTGTCATTTATCCTGTAAAGCAGATGGCTTGACTGAAGAATCCTCCCTCGTGTCACCCTCAGGAAGCGAAGACAGAATCCTGCACAATGAGCCACATAGAGATTTACCTGCAACAGATCTTAGGCGTGTTTCGAATATCTCTAGTTTGAAAGCAGTTGGGAAGAAAAAGACAGCAGGAAAGAAGCTTCAAGGGAATTGTTCAATTGTACATTTCTTCAATAATTACCATAATTCCCAGTCTTCATTGGAGCAGAAGAATGTCAAAATATCATCATCACTTGGATCTCACTCTGCTGATAATAGTCATTCAACTTGTATTCAAGTTGAGATGCCTGCTGAGCACCCTCATGAAGAGTTTGATACAAACAAGAGTCGATGTAGCGTAGGTAATATGCCACAAGGAAGGCAAGATTGGAGTTATAACATCAATGAGATTGACCCCTCTATCATCAATGAATTACCACCAGAAATTCAGCAAGAGTTTCAAATCTGGCTTAGGCCGCATAAGCGGCCTAATGTGGCTAAACGAGGTTCTAGTATTACTCACTATTTCTCACCTGACAAAAGTAGATAA
Predicted protein sequences of Glyma.08g088900
>Glyma.08g088900.1.p sequence-type=predicted peptide transcript=Glyma.08g088900.1 locus=Glyma.08g088900 ID=Glyma.08g088900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPVARRETCDGRVIAHVDMDCFYVQVEQRKQPNLRGLPSAVIQYNSYKGGALIAVSYEARRCGVKRSMRGDEAKEACPQIQLVQVPVARGKADLNSYRNAGSEVVSVLSQKGRCERASIDEVYLDLTHAAETMLMETPLDSMQDFEDEVLKSHVLGLEIKDGSDAKDEVRKWLCRSDASYQDKLLACGALIVCDLRMKVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTVVPQSSVEGLLASLPIKKMKHLGGKLGSSLQSDLGVNTVGDLLQFSEEKLQQWYGINTGTWLWNIARGISGEEVEGRLLPKSHGSGKTFPGPQALKTVDSVQHWLNQLCEELNERLHSDLDQNKRIAQTLTLHARAYKTGDSDSHRKFPSKSCPLRYGTRKIQEDALILFQAGLRDFLGFYNCKAHGNENNNWGVTSLSVSASKLVSIPSGTHSIVKYFGGSFPSSSTSNQSLDVVIDEAAPSSPSGSGNCSGLVPNEFELEYPEDTGMKDSKACLDQQDPLCHLSCKADGLTEESSLVSPSGSEDRILHNEPHRDLPATDLRRVSNISSLKAVGKKKTAGKKLQGNCSIVHFFNNYHNSQSSLEQKNVKISSSLGSHSADNSHSTCIQVEMPAEHPHEEFDTNKSRCSVGNMPQGRQDWSYNINEIDPSIINELPPEIQQEFQIWLRPHKRPNVAKRGSSITHYFSPDKSR*

>Glyma.08g088900.2.p sequence-type=predicted peptide transcript=Glyma.08g088900.2 locus=Glyma.08g088900 ID=Glyma.08g088900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKIIIKCDCDVSVVQREKGEKQIWREKKRRGDAGGEARDVRWKSDCSCRHGLLLCSSSMRGDEAKEACPQIQLVQVPVARGKADLNSYRNAGSEVVSVLSQKGRCERASIDEVYLDLTHAAETMLMETPLDSMQDFEDEVLKSHVLGLEIKDGSDAKDEVRKWLCRSDASYQDKLLACGALIVCDLRMKVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTVVPQSSVEGLLASLPIKKMKHLGGKLGSSLQSDLGVNTVGDLLQFSEEKLQQWYGINTGTWLWNIARGISGEEVEGRLLPKSHGSGKTFPGPQALKTVDSVQHWLNQLCEELNERLHSDLDQNKRIAQTLTLHARAYKTGDSDSHRKFPSKSCPLRYGTRKIQEDALILFQAGLRDFLGFYNCKAHGNENNNWGVTSLSVSASKLVSIPSGTHSIVKYFGGSFPSSSTSNQSLDVVIDEAAPSSPSGSGNCSGLVPNEFELEYPEDTGMKDSKACLDQQDPLCHLSCKADGLTEESSLVSPSGSEDRILHNEPHRDLPATDLRRVSNISSLKAVGKKKTAGKKLQGNCSIVHFFNNYHNSQSSLEQKNVKISSSLGSHSADNSHSTCIQVEMPAEHPHEEFDTNKSRCSVGNMPQGRQDWSYNINEIDPSIINELPPEIQQEFQIWLRPHKRPNVAKRGSSITHYFSPDKSR*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo