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Report for Sequence Feature Glyma.08g087500

Feature Type:gene_model
Chromosome:Gm08
Start:6620899
stop:6626128
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g087500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G44050.1AT 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase JGI N/AIEA
GO:0009231GO-bp riboflavin biosynthetic process EnsemblGenomesN/AIEA
GO:0009231GO-bp riboflavin biosynthetic process JGI N/AIEA
GO:0009349GO-cc riboflavin synthase complex EnsemblGenomesN/AIEA
GO:0009349GO-cc riboflavin synthase complex JGI N/AIEA
GO:0009570GO-cc chloroplast stroma EnsemblGenomesN/AIEA
GO:0000906GO-mf 6,7-dimethyl-8-ribityllumazine synthase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
KOG3243 KOG 6,7-dimethyl-8-ribityllumazine synthase JGI N/AIEA
PTHR21058Panther 6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE (DMRL SYNTHASE) (LUMAZINE SYNTHASE) JGI N/AIEA
PF00885PFAM 6,7-dimethyl-8-ribityllumazine synthase JGI N/AIEA
RIBOSYN2-PWYSoyCyc9 flavin biosynthesis I (bacteria and plants) Plant Metabolic Network ISS
GN7V-53471SoyCyc9-rxn 6,7-dimethyl-8-ribityllumazine synthase Plant Metabolic Network ISS

Expression Patterns of Glyma.08g087500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g087500 not represented in the dataset
Glyma.08g087500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g087500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g09260 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g087500
>Glyma.08g087500.2 sequence-type=transcript locus=Glyma.08g087500 ID=Glyma.08g087500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCACGTGAGATATTTTTTAACGAAAAGCAATAAGCAAGGCCACCCGAACCAGTGAACCCTAAACGCCGTCGACGCCGTGGCTGGAAGAATATGGCTTCATTTGTTTCTACCCACTGTATCCTTCCTAGCGGGGTTGGATTTGTGCATGACCAAGATCGTTCTTGTGGTAgaactaacactttgcatcttcaaaatgctcctaaaagccctagctctctctcctttttgctctccgtgcgagaaagtagatcagatgccgttgttgttcagagcaagggtcgatcgtctttttctcaaacagctgctgtgaggcatcttacaggttctgttaccagagcccatggacttcgttttgctgtgGTTGTTGCTAGATTTAATGAAATTGTTACCAAACCGCTCTTGGAAGGTGCTTTGGGTACTTTCAATAATTATTCAGTTCAAGATGAGGATATCGATGTTGTGTGGGTACCTGGTAGTTTTGAAATTGGTGTTGTTGCAGAAAGGCTTGGAAAATCAGGCAAATATGATGCAATCGTATGCATAGGAGCTGTGGTACGAGGAGATACAACCCACTATGATGCAGTTGCTAATTCAGCAGCATCAGGAGTTCTTTCAGCCAGTCTAAACTCAGGTGTTCCATGCATATTTGGTGTCCTAACATGTGATGATATGGATCAGGCTCTAAATAGAGCTGGTGGAAAGTCTGGGAATAAGGGTGCTGAGGCTGCATTGACTGCTATTGAGATGGCATCTTTGTTCGAGCACCATCTGAAGTAGTCAGTGTTTTAACCAATCTCATAGAGCTTTTGTTGGAACGGCATGAATTCCCAATTTTCATCTCCAGACTGCTTTTGGTTGTAGTTCGAAATATATTCTTGTATGTTCTCAAACTATTAAGGCTATGTTTGAATATTTAATGGTgagtggaatagaatggagtggatggtggcagaattgaatggaatAAATTAAAAATAAAAAGTTTCGTTCTATTTAGATATTTTATGATGGTACAGAATAAATTTCCATTCTATTACTTCATTGTATAATGATAATTTTATTATTCTTATCCCTTGTCATGAATAAGTATGTTTGTATCATTGGCTAATTCGGAAGTTTTATACGGATTGGGCTAATCTGAAAGCCTCATACGGATTGGCTTctc

>Glyma.08g087500.3 sequence-type=transcript locus=Glyma.08g087500 ID=Glyma.08g087500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCACGTGAGATATTTTTTAACGAAAAGCAATAAGCAAGGCCACCCGAACCAGTGAACCCTAAACGCCGTCGACGCCGTGGCTGGAAGAATATGGCTTCATTTGTTTCTACCCACTGTATCCTTCCTAGCGGGGTTGGATTTGTGCATGACCAAGATCGTTCTTGTGGTAgaactaacactttgcatcttcaaaatgctcctaaaagccctagctctctctcctttttgctctccgtgcgagaaagtagatcagatgccgttgttgttcagagcaagggtcgatcgtctttttctcaaacagctgctgtgaggcatcttacaggttctgttaccagagcccatggacttcgttttgctgtgGTTGTTGCTAGATTTAATGAAATTGTTACCAAACCGCTCTTGGAAGGTGCTTTGGGTACTTTCAATAATTATTCAGTTCAAGATGAGGATATCGATGTTGTGTGGGTACCTGGTAGTTTTGAAATTGGTGTTGTTGCAGAAAGGCTTGGAAAATCAGGCAAATATGATGCAATCGTATGCATAGGAGCTGTGGTACGAGGAGATACAACCCACTATGATGCAGTTGCTAATTCAGCAGCATCAGGAGTTCTTTCAGCCAGTCTAAACTCAGGTGTTCCATGCATATTTGGTGTCCTAACATGTGATGATATGGATCAGGCTCTAAATAGAGCTGGTGGAAAGTCTGGGAATAAGGGTGCTGAGGCTGCATTGACTGCTATTGAGATGGCATCTTTGTTCGAGCACCATCTGAAGTAGTCAGTGTTTTAACCAATCTCATAGAGCTTTTGTTGGAACGGCATGAATTCCCAATTTTCATCTCCAGACTGCTTTTGGTTGTAGTTCGAAATATATTCTTGTATGTTCTCAAACTATTAAGGCTATGTTTGAATATTTAATGGTgagtggaatagaatggagtggatggtggcagaattgaatggaatAAATTAAAAATAAAAAGTTTCGTTCTATTTAGATATTTTATGATGGTACAGAATAAATTTCCATTCTATTACTTCATTGTATAATGATAATTTTATTATTCTTATCCCTTGTCATGAATAAGTATGTTTGTATCATTGGCTAATTCGGAAGTTTTATACGGATTGGGCTAATCTGAAAGCCTCATACGGATTGGCTTctc
Coding sequences of Glyma.08g087500
>Glyma.08g087500.1 sequence-type=CDS polypeptide=Glyma.08g087500.1.p locus=Glyma.08g087500 ID=Glyma.08g087500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCATTTGTTTCTACCCACTGTATCCTTCCTAGCGGGGTTGGATTTGTGCATGACCAAGATCGTTCTTGTGGTAGAACTAACACTTTGCATCTTCAAAATGCTCCTAAAAGCCCTAGCTCTCTCTCCTTTTTGCTCTCCGTGCGAGCTTCAGAAAGTAGATCAGATGCCGTTGTTGTTCAGAGCAAGGGTCGATCGTCTTTTTCTCAAACAGCTGCTGTGAGGCATCTTACAGGTTCTGTTACCAGAGCCCATGGACTTCGTTTTGCTGTGGTTGTTGCTAGATTTAATGAAATTGTTACCAAACCGCTCTTGGAAGGTGCTTTGGGTACTTTCAATAATTATTCAGTTCAAGATGAGGATATCGATGTTGTGTGGGTACCTGGTAGTTTTGAAATTGGTGTTGTTGCAGAAAGGCTTGGAAAATCAGGCAAATATGATGCAATCGTATGCATAGGAGCTGTGGTACGAGGAGATACAACCCACTATGATGCAGTTGCTAATTCAGCAGCATCAGGAGTTCTTTCAGCCAGTCTAAACTCAGGTGTTCCATGCATATTTGGTGTCCTAACATGTGATGATATGGATCAGGCTCTAAATAGAGCTGGTGGAAAGTCTGGGAATAAGGGTGCTGAGGCTGCATTGACTGCTATTGAGATGGCATCTTTGTTCGAGCACCATCTGAAGTAG

>Glyma.08g087500.2 sequence-type=CDS polypeptide=Glyma.08g087500.2.p locus=Glyma.08g087500 ID=Glyma.08g087500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCATTTGTTTCTACCCACTGTATCCTTCCTAGCGGGGTTGGATTTGTGCATGACCAAGATCGTTCTTGTGGTAGAACTAACACTTTGCATCTTCAAAATGCTCCTAAAAGCCCTAGCTCTCTCTCCTTTTTGCTCTCCGTGCGAGAAAGTAGATCAGATGCCGTTGTTGTTCAGAGCAAGGGTCGATCGTCTTTTTCTCAAACAGCTGCTGTGAGGCATCTTACAGGTTCTGTTACCAGAGCCCATGGACTTCGTTTTGCTGTGGTTGTTGCTAGATTTAATGAAATTGTTACCAAACCGCTCTTGGAAGGTGCTTTGGGTACTTTCAATAATTATTCAGTTCAAGATGAGGATATCGATGTTGTGTGGGTACCTGGTAGTTTTGAAATTGGTGTTGTTGCAGAAAGGCTTGGAAAATCAGGCAAATATGATGCAATCGTATGCATAGGAGCTGTGGTACGAGGAGATACAACCCACTATGATGCAGTTGCTAATTCAGCAGCATCAGGAGTTCTTTCAGCCAGTCTAAACTCAGGTGTTCCATGCATATTTGGTGTCCTAACATGTGATGATATGGATCAGGCTCTAAATAGAGCTGGTGGAAAGTCTGGGAATAAGGGTGCTGAGGCTGCATTGACTGCTATTGAGATGGCATCTTTGTTCGAGCACCATCTGAAGTAG

>Glyma.08g087500.3 sequence-type=CDS polypeptide=Glyma.08g087500.3.p locus=Glyma.08g087500 ID=Glyma.08g087500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCATTTGTTTCTACCCACTGTATCCTTCCTAGCGGGGTTGGATTTGTGCATGACCAAGATCGTTCTTGTGGTAGAACTAACACTTTGCATCTTCAAAATGCTCCTAAAAGCCCTAGCTCTCTCTCCTTTTTGCTCTCCGTGCGAGAAAGTAGATCAGATGCCGTTGTTGTTCAGAGCAAGGGTCGATCGTCTTTTTCTCAAACAGCTGCTGTGAGGCATCTTACAGGTTCTGTTACCAGAGCCCATGGACTTCGTTTTGCTGTGGTTGTTGCTAGATTTAATGAAATTGTTACCAAACCGCTCTTGGAAGGTGCTTTGGGTACTTTCAATAATTATTCAGTTCAAGATGAGGATATCGATGTTGTGTGGGTACCTGGTAGTTTTGAAATTGGTGTTGTTGCAGAAAGGCTTGGAAAATCAGGCAAATATGATGCAATCGTATGCATAGGAGCTGTGGTACGAGGAGATACAACCCACTATGATGCAGTTGCTAATTCAGCAGCATCAGGAGTTCTTTCAGCCAGTCTAAACTCAGGTGTTCCATGCATATTTGGTGTCCTAACATGTGATGATATGGATCAGGCTCTAAATAGAGCTGGTGGAAAGTCTGGGAATAAGGGTGCTGAGGCTGCATTGACTGCTATTGAGATGGCATCTTTGTTCGAGCACCATCTGAAGTAG
Predicted protein sequences of Glyma.08g087500
>Glyma.08g087500.1.p sequence-type=predicted peptide transcript=Glyma.08g087500.1 locus=Glyma.08g087500 ID=Glyma.08g087500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASFVSTHCILPSGVGFVHDQDRSCGRTNTLHLQNAPKSPSSLSFLLSVRASESRSDAVVVQSKGRSSFSQTAAVRHLTGSVTRAHGLRFAVVVARFNEIVTKPLLEGALGTFNNYSVQDEDIDVVWVPGSFEIGVVAERLGKSGKYDAIVCIGAVVRGDTTHYDAVANSAASGVLSASLNSGVPCIFGVLTCDDMDQALNRAGGKSGNKGAEAALTAIEMASLFEHHLK*

>Glyma.08g087500.2.p sequence-type=predicted peptide transcript=Glyma.08g087500.2 locus=Glyma.08g087500 ID=Glyma.08g087500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASFVSTHCILPSGVGFVHDQDRSCGRTNTLHLQNAPKSPSSLSFLLSVRESRSDAVVVQSKGRSSFSQTAAVRHLTGSVTRAHGLRFAVVVARFNEIVTKPLLEGALGTFNNYSVQDEDIDVVWVPGSFEIGVVAERLGKSGKYDAIVCIGAVVRGDTTHYDAVANSAASGVLSASLNSGVPCIFGVLTCDDMDQALNRAGGKSGNKGAEAALTAIEMASLFEHHLK*

>Glyma.08g087500.3.p sequence-type=predicted peptide transcript=Glyma.08g087500.3 locus=Glyma.08g087500 ID=Glyma.08g087500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASFVSTHCILPSGVGFVHDQDRSCGRTNTLHLQNAPKSPSSLSFLLSVRESRSDAVVVQSKGRSSFSQTAAVRHLTGSVTRAHGLRFAVVVARFNEIVTKPLLEGALGTFNNYSVQDEDIDVVWVPGSFEIGVVAERLGKSGKYDAIVCIGAVVRGDTTHYDAVANSAASGVLSASLNSGVPCIFGVLTCDDMDQALNRAGGKSGNKGAEAALTAIEMASLFEHHLK*






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