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Report for Sequence Feature Glyma.08g087000

Feature Type:gene_model
Chromosome:Gm08
Start:6586086
stop:6588338
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g087000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G74270.1AT Ribosomal protein L35Ae family protein JGI N/AIEA
GO:0002181GO-bp cytoplasmic translation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation JGI N/AIEA
GO:0042273GO-bp ribosomal large subunit biogenesis EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome JGI N/AIEA
GO:0022625GO-cc cytosolic large ribosomal subunit EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome JGI N/AIEA
KOG0887 KOG 60S ribosomal protein L35A/L37 JGI N/AIEA
PTHR10902Panther 60S RIBOSOMAL PROTEIN L35A JGI N/AIEA
PF01247PFAM Ribosomal protein L35Ae JGI N/AIEA

Expression Patterns of Glyma.08g087000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g087000
ParalogEvidenceComments
Glyma.05g132500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g087000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g09200 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g087000
>Glyma.08g087000.2 sequence-type=transcript locus=Glyma.08g087000 ID=Glyma.08g087000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTCCTTTCCCTATAAAACCCCTAAAAACCCATATTCCGATAGTTCTAGTCTAGGGTTACGCCGTCGTCGCTGTTTGTGTGTGTATCAGGTGCAGCTACCAACGATGGTGAAGGGTCGTCAAGGAGAGCGCGTCAGACTCTACGTGAGGGGTACAATCCTTGGATACAAAAGGTCCAAGTCCAACCAGTACCCAAACACATCCCTGATCCAAATTGAGGGAGTGAACACCAAAGAAGAAGTAGGATGGTATGCTGGCAAGAAAATGGCCTATATCTACAAGGCTAAGGTGAAAAAGGATGGAAGCCATTACCGCTGCATATGGGGCAAGGTTACGAGGCCTCACGGCAACAGTGGTGTTGTCCGTGCAAAATTCAAGTCAAACCTTCCACCCAGATCGATGGGAGCTCGAGTAAGAGTATTCATGTATCCAAGTAATATATGAGGTGATAAGACGCTCAGAATTCGCAGCTTAATAGTAGGCACAAGGATTTTTGTTTCAGCTTTGATAATTTTGTTGTCTGTCAACTTTTTGAGAATTTTCCTTACGGTTTAGACGTTCATTTGAACGAATGTTTTTCTCCGTTATTATAGCTATTGTCTATGAAGATTATATATTCATTACTATGAAGCGTGTGGATTTGGTTACCTTGAATGTTCGCATTTCTATTCCCGATTTTCATTTGACAAAGTTACTCGGCTCCATCCATCGTAATTGTGCGTGTGTTGCTTAATAGAATTTAATTATTGACTGTATATTTTTGCAT
Coding sequences of Glyma.08g087000
>Glyma.08g087000.1 sequence-type=CDS polypeptide=Glyma.08g087000.1.p locus=Glyma.08g087000 ID=Glyma.08g087000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGAAGGGTCGTCAAGGAGAGCGCGTCAGACTCTACGTGAGGGGTACAATCCTTGGATACAAAAGGTCCAAGTCCAACCAGTACCCAAACACATCCCTGATCCAAATTGAGGGAGTGAACACCAAAGAAGAAGTAGGATGGTATGCTGGCAAGAAAATGGCCTATATCTACAAGGCTAAGGTGAAAAAGGATGGAAGCCATTACCGCTGCATATGGGGCAAGGTTACGAGGCCTCACGGCAACAGTGGTGTTGTCCGTGCAAAATTCAAGTCAAACCTTCCACCCAGATCGATGGGAGCTCGAGTAAGAGTATTCATGTATCCAAGTAATATATGA

>Glyma.08g087000.2 sequence-type=CDS polypeptide=Glyma.08g087000.2.p locus=Glyma.08g087000 ID=Glyma.08g087000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGAAGGGTCGTCAAGGAGAGCGCGTCAGACTCTACGTGAGGGGTACAATCCTTGGATACAAAAGGTCCAAGTCCAACCAGTACCCAAACACATCCCTGATCCAAATTGAGGGAGTGAACACCAAAGAAGAAGTAGGATGGTATGCTGGCAAGAAAATGGCCTATATCTACAAGGCTAAGGTGAAAAAGGATGGAAGCCATTACCGCTGCATATGGGGCAAGGTTACGAGGCCTCACGGCAACAGTGGTGTTGTCCGTGCAAAATTCAAGTCAAACCTTCCACCCAGATCGATGGGAGCTCGAGTAAGAGTATTCATGTATCCAAGTAATATATGA
Predicted protein sequences of Glyma.08g087000
>Glyma.08g087000.1.p sequence-type=predicted peptide transcript=Glyma.08g087000.1 locus=Glyma.08g087000 ID=Glyma.08g087000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVGWYAGKKMAYIYKAKVKKDGSHYRCIWGKVTRPHGNSGVVRAKFKSNLPPRSMGARVRVFMYPSNI*

>Glyma.08g087000.2.p sequence-type=predicted peptide transcript=Glyma.08g087000.2 locus=Glyma.08g087000 ID=Glyma.08g087000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVGWYAGKKMAYIYKAKVKKDGSHYRCIWGKVTRPHGNSGVVRAKFKSNLPPRSMGARVRVFMYPSNI*






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