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Report for Sequence Feature Glyma.08g086600

Feature Type:gene_model
Chromosome:Gm08
Start:6550226
stop:6553849
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g086600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G30950.1AT FtsH extracellular protease family JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0006508GO-bp proteolysis JGI N/AIEA
GO:0010027GO-bp thylakoid membrane organization EnsemblGenomesN/AIEA
GO:0010205GO-bp photoinhibition EnsemblGenomesN/AIEA
GO:0010206GO-bp photosystem II repair EnsemblGenomesN/AIEA
GO:0010304GO-bp PSII associated light-harvesting complex II catabolic process EnsemblGenomesN/AIEA
GO:0009535GO-cc chloroplast thylakoid membrane EnsemblGenomesN/AIEA
GO:0009941GO-cc chloroplast envelope EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0004176GO-mf ATP-dependent peptidase activity EnsemblGenomesN/AIEA
GO:0004222GO-mf metalloendopeptidase activity EnsemblGenomesN/AIEA
GO:0004222GO-mf metalloendopeptidase activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0008233GO-mf peptidase activity EnsemblGenomesN/AIEA
GO:0008237GO-mf metallopeptidase activity EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
KOG0731 KOG AAA+-type ATPase containing the peptidase M41 domain JGI N/AIEA
PTHR23076Panther METALLOPROTEASE M41 FTSH JGI N/AIEA
PTHR23076:SF34Panther JGI N/AIEA
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI N/AIEA
PF01434PFAM Peptidase family M41 JGI N/AIEA
PF06480PFAM FtsH Extracellular JGI N/AIEA

Expression Patterns of Glyma.08g086600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g086600
ParalogEvidenceComments
Glyma.05g132000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g086600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g09160 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g086600
>Glyma.08g086600.1 sequence-type=CDS polypeptide=Glyma.08g086600.1.p locus=Glyma.08g086600 ID=Glyma.08g086600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGCATCATCAGCATGCCTTGTAGGGAATGGTTTATCTACACGGGGTAATAGAATAACTCTTAAGAAGGACTTCAATGGAAGAAGATATCTCTACTCATCTTGGAGATTTTCATTATTGAACAACAATAAGGCATCAAAAGCATTTTCCATAAAGGCATCTTTGGAGCAAAGGCAAGAAGAAGGGAGAAGGGGGTTTCTGAAACTGTTGCTTGGAAATCTGGGAGTTGGTTTGCCTGCACTATTGGGAAGTGGCAAAGCTTATGCTGATGAACAAGGGGTTTCATCCTCCAGAATGTCTTACTCCAGGTTTCTGGAGTATTTGGACAAGGACAGAGTTAAAAAAGTGGATCTTTATGACAATGGAAACACTGCTGTTGTTGAGGCTGTTTCGCCCGAGTTGGGGAACCGGTCACAGTATGTTAGAGTTCAACTCCCTGGACTTAACCAAGAGCTCCTTCAGAAATTCAGGGAAAAGAATATTGACTTTGCAGCTCATAGTCCCCAAGAAGAGTCAGGTTCTCTTTTAGCTAACCTGATTGGGAATCTGGCTTTCCCTTTGCTCTTGATTGGAGGATTGTTCCTTCTCTCGAGACGATCCGGAGGGATGGGAGGTCCTGGTGGCCCTGGATTTCCTCTTGCTTTTGGTCAATCCAAAGCCAAGTTTCAAATGGAACCAAACACCGGAGTGACATTTGATGATGTTGCTGGGGTGGATGAAGCCAAGCAGGACTTTATGGAGGTGGTGGAGTTTTTAAAGAAGCCTGAGAGGTTTACTGCTGTTGGGGCTCGCATTCCTAAAGGAGTTCTTCTTGTTGGTCCTCCAGGAACTGGGAAGACCTTGTTAGCCAAGGCTATTGCTGGTGAAGCTGGTGTTCCATTTTTCTCTATATCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTTGGTGCTTCTCGTGTTCGTGATTTGTTCAAGAAGGCGAAAGAGAATGCCCCTTGCATTGTCTTTGTTGATGAAATTGATGCTGTTGGAAGACAAAGAGGGACTGGAATTGGTGGAGGGAATGATGAAAGAGAGCAGACCCTCAACCAACTTTTGACAGAAATGGATGGGTTTGAGGGTAACACAGGTATCATTGTCGTTGCAGCAACTAACAGGGCTGACATTCTTGACTCGGCCTTGTTGAGACCTGGCCGATTTGATAGACAGGTGACAGTTGATGTTCCAGATATAAGGGGAAGGACTGAAATCCTAAAGGTTCATGCTAGCAACAAAAAGTTTGATGCTGATGTTTCTCTTGAAGTGATTGCAATGAGAACACCTGGCTTTAGTGGAGCTGATCTTGCGAATCTGTTGAATGAAGCTGCTATATTAGCTGGTCGCCGTGGAAAGACAGCTATTTCATCTAAAGAAATTGATGATTCTATTGATAGGATTGTGGCTGGAATGGAAGGAACAGTGATGACAGATGGGAAGAGCAAAAGTTTAGTGGCATATCATGAAGTTGGTCATGCTATTTGTGGAACTTTGACTCCTGGTCATGATGCTGTGCAAAAGGTAACACTAGTTCCTCGCGGTCAAGCTCGTGGACTTACATGGTTCATTCCTAACGATGACCCAACTCTGATCTCCAAACAACAACTCTTTGCAAGAATTGTTGGAGGACTAGGTGGGAGGGCTGCAGAAGAAATTATTTTCGGTGAGCCTGAAGTTACAACTGGAGCAGCTGGTGATTTGCAGCAAATCACCAGTTTGGCAAAACAGATGGTGACCACATTTGGAATGTCTGATATTGGTCCTTGGTCACTTATGGAACCATCAGCACAAGGTGGGGATGTCATCATGAGAATGATGGCAAGGAACTCAATGTCAGAGAGGCTTGCAGAAGACATTGATGCTGCCATCAAGAGGATCTCAGATGAAGCATATGAAATTGCACTGGAGCATATAAGGAACAACCGTGAGGCCATTGACAAGATTGTGGAAGTCCTTCTGGAGAAGGAGACTCTGAGCGGAGATGAATTCCGTGCTATATTGTCTGAGTTTGTTGAAATTCCAGCTGAAAACCGTGTTGCTCCTTCAACTCCAGTACCAGCCACTGTTTGA
Predicted protein sequences of Glyma.08g086600
>Glyma.08g086600.1.p sequence-type=predicted peptide transcript=Glyma.08g086600.1 locus=Glyma.08g086600 ID=Glyma.08g086600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAASSACLVGNGLSTRGNRITLKKDFNGRRYLYSSWRFSLLNNNKASKAFSIKASLEQRQEEGRRGFLKLLLGNLGVGLPALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLYDNGNTAVVEAVSPELGNRSQYVRVQLPGLNQELLQKFREKNIDFAAHSPQEESGSLLANLIGNLAFPLLLIGGLFLLSRRSGGMGGPGGPGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVVAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHASNKKFDADVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDAVQKVTLVPRGQARGLTWFIPNDDPTLISKQQLFARIVGGLGGRAAEEIIFGEPEVTTGAAGDLQQITSLAKQMVTTFGMSDIGPWSLMEPSAQGGDVIMRMMARNSMSERLAEDIDAAIKRISDEAYEIALEHIRNNREAIDKIVEVLLEKETLSGDEFRAILSEFVEIPAENRVAPSTPVPATV*






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