Glyma.08g085100

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Report for Sequence Feature Glyma.08g085100

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6402615
stop:	6407035
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g085100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G59180.1	AT	DNA-directed RNA polymerase II	JGI	N/A	IEA
GO:0000291	GO-bp	nuclear-transcribed mRNA catabolic process, exonucleolytic	EnsemblGenomes	N/A	IEA
GO:0006351	GO-bp	transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006351	GO-bp	transcription, DNA-templated	JGI	N/A	IEA
GO:0006367	GO-bp	transcription initiation from RNA polymerase II promoter	EnsemblGenomes	N/A	IEA
GO:0045948	GO-bp	positive regulation of translational initiation	EnsemblGenomes	N/A	IEA
GO:0060213	GO-bp	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	EnsemblGenomes	N/A	IEA
GO:0000932	GO-cc	P-body	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0005665	GO-cc	DNA-directed RNA polymerase II, core complex	EnsemblGenomes	N/A	IEA
GO:0003676	GO-mf	nucleic acid binding	EnsemblGenomes	N/A	IEA
GO:0003697	GO-mf	single-stranded DNA binding	EnsemblGenomes	N/A	IEA
GO:0003723	GO-mf	RNA binding	JGI	N/A	IEA
GO:0003727	GO-mf	single-stranded RNA binding	EnsemblGenomes	N/A	IEA
GO:0003899	GO-mf	DNA-directed 5'-3' RNA polymerase activity	EnsemblGenomes	N/A	IEA
GO:0003899	GO-mf	DNA-directed RNA polymerase activity	JGI	N/A	IEA
GO:0031369	GO-mf	translation initiation factor binding	EnsemblGenomes	N/A	IEA
KOG3298	KOG	DNA-directed RNA polymerase subunit E'	JGI	N/A	IEA
PTHR12709	Panther	DNA-DIRECTED RNA POLYMERASE II, III	JGI	N/A	IEA
PF00575	PFAM	S1 RNA binding domain	JGI	N/A	IEA
PF03876	PFAM	SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397	JGI	N/A	IEA

Proteins Associated with Glyma.08g085100

Locus	Gene Symbol	Protein Name
	RNA polymerase II	DNA-directed RNA polymerase II subunit RPB7

Expression Patterns of Glyma.08g085100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g085100 not represented in the dataset	Glyma.08g085100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.08g085100

Paralog	Evidence	Comments
Glyma.05g130300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g085100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g09000	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.08g085100

Limit To All Plant Sequences

>Glyma.08g085100.2 sequence-type=transcript locus=Glyma.08g085100 ID=Glyma.08g085100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTTGTTCCTTAAATAAAGGAAGAAAATGTTGTTGCACGAGACATCGAAGAACAGCACTCTGGTTGCCGTGCCACCATCTTCTCCAAAGTTATCATATTCGAAGAGAAAAAAGGTAAAGACAGAGGAGTGACTGTCCAGGTTGGGCAATTAGGGACGGAAAAGGAGAAACACGAAAATGTTTTTCCACATAGTACTGGAGCGAAATATGCAGCTTCATCCACGCTACTTTGGTCGTAACCTTCGCGATAATCTCGTTTCCAAGCTTATGAAAGACGTGGAAGGCACTTGCAGTGGCCGACATGGATTTGTGGTGGCAGTTACAGGGATAGAGAACATAGGGAAAGGGCTAATTCGTGATGGAACAGGGTTTGTGACATTTCCAGTTAAGTACCAATGTGTTGTCTTCAGACCGTTTAAGGGAGAGATCTTGGAAGCAGTTGTTACTATGGTGAACAAGATGGGATTTTTTGCTGAAGCTGGACCTGTCCAAATCTTTGTTTCAAACCATTTGATTCCGGATGATATGGAGTTCCAGTCTGGAGACATGCCAAATTACACTACATCAGATGGATCAGTTAAGATTCAAAAAGATAGTGAAGTGAGACTAAAGATAATTGGGACTCGAGTGGATGCTACAGAAATTTTCTGCATAGGTACCATAAAAGATGATTTCTTGGGTGTGATCAACGACCCTGCAACAGTTTAAATACCCCTTTCTGTACTATTGTATCGTATATAGTTTGCATGACTTGGATTTTTACACCTTAATCCGATTCAGATATTATGTTTTCTTACTCGATTGTTGAAAGTACTAAGTCGTTGAGTTTTTAGTTCCAGAATCAATTTTCAATCCCACAAGTAATTTTGGGAAATGCCATCAAGCAAGATGAGCTGTACTATTCCAATAAAATTGTTAGTTGCCTGTAAATTTCAAAAGCTGTTGACGTAGTAAAAATGAGACTGGATGCAGGATTTTCGATATAAATTGTATATACTTTAATCAAATGATACAGATGAAATGGGTATAACTCGTTTTTGTCTAACAAAATATGTTTCAA

>Glyma.08g085100.3 sequence-type=transcript locus=Glyma.08g085100 ID=Glyma.08g085100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTTGTTCCTTAAATAAAGGAAGAAAATGTTGTTGCACGAGACATCGAAGAACAGCACTCTGGTTGCCGTGCCACCATCTTCTCCAAAGTTATCATATTCGAAGAGAAAAAAGGAGTGACTGTCCAGGTTGGGCAATTAGGGACGGAAAAGGAGAAACACGAAAATGTTTTTCCACATAGTACTGGAGCGAAATATGCAGCTTCATCCACGCTACTTTGGTCGTAACCTTCGCGATAATCTCGTTTCCAAGCTTATGAAAGACGTGGAAGGCACTTGCAGTGGCCGACATGGATTTGTGGTGGCAGTTACAGGGATAGAGAACATAGGGAAAGGGCTAATTCGTGATGGAACAGGGTTTGTGACATTTCCAGTTAAGTACCAATGTGTTGTCTTCAGACCGTTTAAGGGAGAGATCTTGGAAGCAGTTGTTACTATGGTGAACAAGATGGGATTTTTTGCTGAAGCTGGACCTGTCCAAATCTTTGTTTCAAACCATTTGATTCCGGATGATATGGAGTTCCAGTCTGGAGACATGCCAAATTACACTACATCAGATGGATCAGTTAAGATTCAAAAAGATAGTGAAGTGAGACTAAAGATAATTGGGACTCGAGTGGATGCTACAGAAATTTTCTGCATAGGTACCATAAAAGATGATTTCTTGGGTGTGATCAACGACCCTGCAACAGTTTAAATACCCCTTTCTGTACTATTGTATCGTATATAGTTTGCATGACTTGGATTTTTACACCTTAATCCGATTCAGATATTATGTTTTCTTACTCGATTGTTGAAAGTACTAAGTCGTTGAGTTTTTAGTTCCAGAATCAATTTTCAATCCCACAAGTAATTTTGGGAAATGCCATCAAGCAAGATGAGCTGTACTATTCCAATAAAATTGTTAGTTGCCTGTAAATTTCAAAAGCTGTTGACGTAGTAAAAATGAGACTGGATGCAGGATTTTCGATATAAATTGTATATACTTTAATCAAATGATACAGATGAAATGGGTATAACTCGTTTTTGTCTAACAAAATATGTTTCAA

Coding sequences of Glyma.08g085100

Limit To All Plant Sequences

>Glyma.08g085100.1 sequence-type=CDS polypeptide=Glyma.08g085100.1.p locus=Glyma.08g085100 ID=Glyma.08g085100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTTTCCACATAGTACTGGAGCGAAATATGCAGCTTCATCCACGCTACTTTGGTCGTAACCTTCGCGATAATCTCGTTTCCAAGCTTATGAAAGACGTGGAAGGCACTTGCAGTGGCCGACATGGATTTGTGGTGGCAGTTACAGGGATAGAGAACATAGGGAAAGGGCTAATTCGTGATGGAACAGGGTTTGTGACATTTCCAGTTAAGTACCAATGTGTTGTCTTCAGACCGTTTAAGGGAGAGATCTTGGAAGCAGTTGTTACTATGGTGAACAAGATGGGATTTTTTGCTGAAGCTGGACCTGTCCAAATCTTTGTTTCAAACCATTTGATTCCGGATGATATGGAGTTCCAGTCTGGAGACATGCCAAATTACACTACATCAGATGGATCAGTTAAGATTCAAAAAGATAGTGAAGTGAGACTAAAGATAATTGGGACTCGAGTGGATGCTACAGAAATTTTCTGCATAGGTACCATAAAAGATGATTTCTTGGGTGTGATCAACGACCCTGCAACAGTTTAA

>Glyma.08g085100.2 sequence-type=CDS polypeptide=Glyma.08g085100.2.p locus=Glyma.08g085100 ID=Glyma.08g085100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTTTCCACATAGTACTGGAGCGAAATATGCAGCTTCATCCACGCTACTTTGGTCGTAACCTTCGCGATAATCTCGTTTCCAAGCTTATGAAAGACGTGGAAGGCACTTGCAGTGGCCGACATGGATTTGTGGTGGCAGTTACAGGGATAGAGAACATAGGGAAAGGGCTAATTCGTGATGGAACAGGGTTTGTGACATTTCCAGTTAAGTACCAATGTGTTGTCTTCAGACCGTTTAAGGGAGAGATCTTGGAAGCAGTTGTTACTATGGTGAACAAGATGGGATTTTTTGCTGAAGCTGGACCTGTCCAAATCTTTGTTTCAAACCATTTGATTCCGGATGATATGGAGTTCCAGTCTGGAGACATGCCAAATTACACTACATCAGATGGATCAGTTAAGATTCAAAAAGATAGTGAAGTGAGACTAAAGATAATTGGGACTCGAGTGGATGCTACAGAAATTTTCTGCATAGGTACCATAAAAGATGATTTCTTGGGTGTGATCAACGACCCTGCAACAGTTTAA

>Glyma.08g085100.3 sequence-type=CDS polypeptide=Glyma.08g085100.3.p locus=Glyma.08g085100 ID=Glyma.08g085100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTTTCCACATAGTACTGGAGCGAAATATGCAGCTTCATCCACGCTACTTTGGTCGTAACCTTCGCGATAATCTCGTTTCCAAGCTTATGAAAGACGTGGAAGGCACTTGCAGTGGCCGACATGGATTTGTGGTGGCAGTTACAGGGATAGAGAACATAGGGAAAGGGCTAATTCGTGATGGAACAGGGTTTGTGACATTTCCAGTTAAGTACCAATGTGTTGTCTTCAGACCGTTTAAGGGAGAGATCTTGGAAGCAGTTGTTACTATGGTGAACAAGATGGGATTTTTTGCTGAAGCTGGACCTGTCCAAATCTTTGTTTCAAACCATTTGATTCCGGATGATATGGAGTTCCAGTCTGGAGACATGCCAAATTACACTACATCAGATGGATCAGTTAAGATTCAAAAAGATAGTGAAGTGAGACTAAAGATAATTGGGACTCGAGTGGATGCTACAGAAATTTTCTGCATAGGTACCATAAAAGATGATTTCTTGGGTGTGATCAACGACCCTGCAACAGTTTAA

Predicted protein sequences of Glyma.08g085100

Limit To All Plant Sequences

>Glyma.08g085100.1.p sequence-type=predicted peptide transcript=Glyma.08g085100.1 locus=Glyma.08g085100 ID=Glyma.08g085100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV*

>Glyma.08g085100.2.p sequence-type=predicted peptide transcript=Glyma.08g085100.2 locus=Glyma.08g085100 ID=Glyma.08g085100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV*

>Glyma.08g085100.3.p sequence-type=predicted peptide transcript=Glyma.08g085100.3 locus=Glyma.08g085100 ID=Glyma.08g085100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATV*

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