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Report for Sequence Feature Glyma.08g084400

Feature Type:gene_model
Chromosome:Gm08
Start:6360443
stop:6366566
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g084400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G46280.1AT Minichromosome maintenance (MCM2/3/5) family protein JGI N/AIEA
GO:0006260GO-bp DNA replication EnsemblGenomesN/AIEA
GO:0006260GO-bp DNA replication JGI N/AIEA
GO:0006270GO-bp DNA replication initiation EnsemblGenomesN/AIEA
GO:0015979GO-bp photosynthesis JGI N/AIEA
GO:0015995GO-bp chlorophyll biosynthetic process JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0042555GO-cc MCM complex EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0004386GO-mf helicase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016851GO-mf magnesium chelatase activity JGI N/AIEA
KOG0479 KOG DNA replication licensing factor, MCM3 component JGI N/AIEA
PTHR11630Panther DNA REPLICATION LICENSING FACTOR JGI N/AIEA
PTHR11630:SF46Panther DNA REPLICATION LICENSING FACTOR MCM3 JGI N/AIEA
PF00493PFAM MCM2/3/5 family JGI N/AIEA

Expression Patterns of Glyma.08g084400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g084400
ParalogEvidenceComments
Glyma.05g129700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g084400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g08920 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g084400
>Glyma.08g084400.2 sequence-type=transcript locus=Glyma.08g084400 ID=Glyma.08g084400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGATTGAGCCTCGAAGTAAAAAAGCCCAAGAAAACTGTGACCAAGCATTTTCCCGCCACAACGCGAGCAAGAGGCTCCATGTTCCCGCCAAATGCAAAGCCCTAGTTAGCGGCAAAAAAAAGGAACCACCACCCTCCTTTTCTTCTATTCTTCTAAATCTCTCTCTTTCTGTTTGTTATCAGAGGCTTCGATACGACAATGGATTTGAGCGAGGAAGTTAGGGCAGCTCACAAGCGAGAATTCTCCGATTTCTTAGATCAAGATGTTGGAAAGGGCATATACATGGACGAAATCAAAACCCTAATCAACCACAAGCGTCACCGCCTCATCGTCAACATCTCCGATCTCCACAACTTCCGCGACTTGGGTAACAGGATTCTGAGGAGTCCAAGTGAGTACATGCAGCCGTTCTGTGACGCGGTCACGGAGGCTACTCGTGCTATCGATCCCAAGTATTTGAAGGAAGGGGAACAAGTGCTTGTTGGATTTGAAGGCCCTTTTGTTTCTCGCCGTGTCACGCCCAGGGAACTTCTCTCTGAATTCATAGGTTCCATGGTCTGTATTGAGGGCATTGTCACTAAATGTTCTCTTGTAAGGCCGAAGGTTGTTAAAAGTGTTCATTTTTGCCCCACCACGGGAAGCTTCACTTCTCGCGAATATCGTGATATTACATCTAATTTGGGATTGCCCACAGGATCTGTTTACCCTACAAGGGATGAAAATGGCAACTTACTCGTGACTGAGTTTGGATTGTGCAAATACAAAGATCATCAAACTTTGTCCATTCAAGAAGTTCCTGAGAATTCTGCTCCTGGTCAACTCCCAAGAACAGTGGATGTCATTGCAGAAGACGATCTTGTTGATTCTTGCAAGCCTGGAGATCGAGTGGCAATTGTGGGGATATATAAGGCTCTTGCAGGGAAAAGCAAAGGCAGTGTGAATGGAGTATTCAGGACTGTTCTCATAGCCAACAATGTTTCTCTTCTCAACAAAGAGGCTAATGCACCAATCTACAGTGCTGAAGATGTCAAAAACATTAAAGAGATAGCTGCAAGAGATGATGCATTTGATCTGCTAAGTAATTCACTTGCACCTTCTATATATGGGCATTCTTGGATAAAGAAAGCAGTGGTTTTGTTGATGCTTAGTGGGGTGGAGAAGAACTTAAAGAATGGCACTCACTTGCGAGGTGACATCAACATGATGATGGTTGGCGATCCCTCTGTTGCCAAGTCTCAACTCTTGAGAGCAATTATGAACATTGCTCCCTTGGCCATATCAACTACAGGCCGGGGTTCTTCTGGGGTTGGTTTGACAGCCGCAGTTACTTCAGATCAAGAAACAGGGGAAAGAAGGCTTGAAGCTGGGGCAATGGTGCTTGCTGACAGAGGTGTTGTCTGCATTGATGAATTTGACAAGATGAATGATCAAGATCGTGTTGCTATACATGAAGTTATGGAGCAGCAGACCGTGACTATTGCCAAAGCTGGTATCCATGCTTCACTGAATGCCCGATGCAGTGTGGTTGCAGCTGCAAATCCCATATATGGAACTTATGATCGTTCATTGACTCCAACCAAAAATATCGGACTCCCAGACTCCTTGCTTTCTCGATTTGATCTACTTTTTATTGTGTTGGATCAAATGGATCCTGATATTGATCGTCGAATATCAGAGCATGTCCTTCGTATGCATCGATTTCGTTCTGCTGTTGATGGAGGTGAGGCAGCACTTGATGGGAGCTCAAGATATGGAAGAGAAGATGAAGCTGATATGGACTCATCTGTCTTTGTCAAATATAACAGAATGTTACATGGGAAGAAAACTGGAAGAGGTCAAAAACGTGATACGCTTACAATTAAGTTTCTTAAAAAATTTATCCACTATGCTAAGCATAGGATTCAACCTGAACTGACTGATGAGGCATCTGAGAACATTGCCACGGCCTATGCTGAGCTCAGAAATTCAAGTTCAAATGCAAAGACTGGAGGAACACTTCCCATAACTGCCAGAACTTTAGAAACCATAATACGTCTCTCAACAGCTCATGCCAAATTGAAGTTGAGCAGAGAGGTTTCTAAGTCTGATGTTGAAGCAGCTTTGAAGGTTCTAAATTTTGCAATATATCACAAAGAACTGACAGAAATGGAGGAGCGTGAGCAAGAGAGGGAGAGAGAGCTGGACAGGAAGCGCAAGGCTGATCATGATGAAAATGATGGTCCTGATCGTGGTCCTAAAGATAGAAGAGGTCCTAAAGATAAAAGAGGGCCAACATCAACGGATGCCATGGAAGTAGATGATAACTCAGCAACTCATGCTGCTGTCGGACCCACCCCTGAAAGAATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCTGGAACAAATAACTATTGCAAACTTAGGGAATGTTATCAACAGAGGGCAAGATCCACCACCTTACAGTGCTGCAGATATACTACTCCTATTAGAGAGGTTGCAAGACGACAATAGAGTCATGATAACTGATGGAGTGGTGCATATGATATCATAAAATGGAGCAGAATTTGCCTGCCAGGGTAGCTTCATCTTACGCCGGAGGAAGGAGACTTGAGAAGGATTTGCAATTTTCAGAGTTTGTCTATTTACTTGCTATCTGGGAGTTCTTTGCTAACACTTCAACAAGGAAATAGCCTATGTGATTGCATTGGCATACTCTTCATAGAATTCTTTATAATGACCTTTATCATCCCTTAGTTTTTCTTGTTTTGTCCATAATTTGATACTGGCCTTGTCTTTTATGTATTTCAGTGCTCCTAACTGCCAACTATGCGTGTAAACAAGGCTTTAGAAATGACTATTTTTGGTCTCCATAATTTTAAGTCCTGCCTTCCTTTTGGCAAATGGTATCTGGATTTTAACGTACCTGATAACATTAATCACATCACATTCTGCATATTTTTATACTAGAATTTAGAGCACCCTTAAAAAATTGTAATAAATTGTGTACCTCTTGATTACAATTGAGATCCAATATCTCTATTCTCTAAGAAACCTTAAGATGTGGTAGTGTCTATTCCAAGAACATGATCTATTCTGTAACTGAGATATTGATTGGAATGTAGTGTCTGAGTGAAAAAAGGATATTGGCCTCAGTACATTTA
Coding sequences of Glyma.08g084400
>Glyma.08g084400.1 sequence-type=CDS polypeptide=Glyma.08g084400.1.p locus=Glyma.08g084400 ID=Glyma.08g084400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTTGAGCGAGGAAGTTAGGGCAGCTCACAAGCGAGAATTCTCCGATTTCTTAGATCAAGATGTTGGAAAGGGCATATACATGGACGAAATCAAAACCCTAATCAACCACAAGCGTCACCGCCTCATCGTCAACATCTCCGATCTCCACAACTTCCGCGACTTGGGTAACAGGATTCTGAGGAGTCCAAGTGAGTACATGCAGCCGTTCTGTGACGCGGTCACGGAGGCTACTCGTGCTATCGATCCCAAGTATTTGAAGGAAGGGGAACAAGTGCTTGTTGGATTTGAAGGCCCTTTTGTTTCTCGCCGTGTCACGCCCAGGGAACTTCTCTCTGAATTCATAGGTTCCATGGTCTGTATTGAGGGCATTGTCACTAAATGTTCTCTTGTAAGGCCGAAGGTTGTTAAAAGTGTTCATTTTTGCCCCACCACGGGAAGCTTCACTTCTCGCGAATATCGTGATATTACATCTAATTTGGGATTGCCCACAGGATCTGTTTACCCTACAAGGGATGAAAATGGCAACTTACTCGTGACTGAGTTTGGATTGTGCAAATACAAAGATCATCAAACTTTGTCCATTCAAGAAGTTCCTGAGAATTCTGCTCCTGGTCAACTCCCAAGAACAGTGGATGTCATTGCAGAAGACGATCTTGTTGATTCTTGCAAGCCTGGAGATCGAGTGGCAATTGTGGGGATATATAAGGCTCTTGCAGGGAAAAGCAAAGGCAGTGTGAATGGAGTATTCAGGACTGTTCTCATAGCCAACAATGTTTCTCTTCTCAACAAAGAGGCTAATGCACCAATCTACAGTGCTGAAGATGTCAAAAACATTAAAGAGATAGCTGCAAGAGATGATGCATTTGATCTGCTAAGTAATTCACTTGCACCTTCTATATATGGGCATTCTTGGATAAAGAAAGCAGTGGTTTTGTTGATGCTTAGTGGGGTGGAGAAGAACTTAAAGAATGGCACTCACTTGCGAGGTGACATCAACATGATGATGGTTGGCGATCCCTCTGTTGCCAAGTCTCAACTCTTGAGAGCAATTATGAACATTGCTCCCTTGGCCATATCAACTACAGGCCGGGGTTCTTCTGGGGTTGGTTTGACAGCCGCAGTTACTTCAGATCAAGAAACAGGGGAAAGAAGGCTTGAAGCTGGGGCAATGGTGCTTGCTGACAGAGGTGTTGTCTGCATTGATGAATTTGACAAGATGAATGATCAAGATCGTGTTGCTATACATGAAGTTATGGAGCAGCAGACCGTGACTATTGCCAAAGCTGGTATCCATGCTTCACTGAATGCCCGATGCAGTGTGGTTGCAGCTGCAAATCCCATATATGGAACTTATGATCGTTCATTGACTCCAACCAAAAATATCGGACTCCCAGACTCCTTGCTTTCTCGATTTGATCTACTTTTTATTGTGTTGGATCAAATGGATCCTGATATTGATCGTCGAATATCAGAGCATGTCCTTCGTATGCATCGATTTCGTTCTGCTGTTGATGGAGGTGAGGCAGCACTTGATGGGAGCTCAAGATATGGAAGAGAAGATGAAGCTGATATGGACTCATCTGTCTTTGTCAAATATAACAGAATGTTACATGGGAAGAAAACTGGAAGAGGTCAAAAACGTGATACGCTTACAATTAAGTTTCTTAAAAAATTTATCCACTATGCTAAGCATAGGATTCAACCTGAACTGACTGATGAGGCATCTGAGAACATTGCCACGGCCTATGCTGAGCTCAGAAATTCAAGTTCAAATGCAAAGACTGGAGGAACACTTCCCATAACTGCCAGAACTTTAGAAACCATAATACGTCTCTCAACAGCTCATGCCAAATTGAAGTTGAGCAGAGAGGTTTCTAAGTCTGATGTTGAAGCAGCTTTGAAGGTTCTAAATTTTGCAATATATCACAAAGAACTGACAGAAATGGAGGAGCGTGAGCAAGAGAGGGAGAGAGAGCTGGACAGGAAGCGCAAGGCTGATCATGATGAAAATGATGGTCCTGATCGTGGTCCTAAAGATAGAAGAGGTCCTAAAGATAAAAGAGGGCCAACATCAACGGATGCCATGGAAGTAGATGATAACTCAGCAACTCATGCTGCTGTCGGACCCACCCCTGAAAGAATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCTGGAACAAATAACTATTGCAAACTTAGGGAATGTTATCAACAGAGGGCAAGATCCACCACCTTACAGTGCTGCAGATATACTACTCCTATTAGAGAGGTTGCAAGACGACAATAGAGTCATGATAACTGATGGAGTGGTGCATATGATATCATAA

>Glyma.08g084400.2 sequence-type=CDS polypeptide=Glyma.08g084400.2.p locus=Glyma.08g084400 ID=Glyma.08g084400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTTGAGCGAGGAAGTTAGGGCAGCTCACAAGCGAGAATTCTCCGATTTCTTAGATCAAGATGTTGGAAAGGGCATATACATGGACGAAATCAAAACCCTAATCAACCACAAGCGTCACCGCCTCATCGTCAACATCTCCGATCTCCACAACTTCCGCGACTTGGGTAACAGGATTCTGAGGAGTCCAAGTGAGTACATGCAGCCGTTCTGTGACGCGGTCACGGAGGCTACTCGTGCTATCGATCCCAAGTATTTGAAGGAAGGGGAACAAGTGCTTGTTGGATTTGAAGGCCCTTTTGTTTCTCGCCGTGTCACGCCCAGGGAACTTCTCTCTGAATTCATAGGTTCCATGGTCTGTATTGAGGGCATTGTCACTAAATGTTCTCTTGTAAGGCCGAAGGTTGTTAAAAGTGTTCATTTTTGCCCCACCACGGGAAGCTTCACTTCTCGCGAATATCGTGATATTACATCTAATTTGGGATTGCCCACAGGATCTGTTTACCCTACAAGGGATGAAAATGGCAACTTACTCGTGACTGAGTTTGGATTGTGCAAATACAAAGATCATCAAACTTTGTCCATTCAAGAAGTTCCTGAGAATTCTGCTCCTGGTCAACTCCCAAGAACAGTGGATGTCATTGCAGAAGACGATCTTGTTGATTCTTGCAAGCCTGGAGATCGAGTGGCAATTGTGGGGATATATAAGGCTCTTGCAGGGAAAAGCAAAGGCAGTGTGAATGGAGTATTCAGGACTGTTCTCATAGCCAACAATGTTTCTCTTCTCAACAAAGAGGCTAATGCACCAATCTACAGTGCTGAAGATGTCAAAAACATTAAAGAGATAGCTGCAAGAGATGATGCATTTGATCTGCTAAGTAATTCACTTGCACCTTCTATATATGGGCATTCTTGGATAAAGAAAGCAGTGGTTTTGTTGATGCTTAGTGGGGTGGAGAAGAACTTAAAGAATGGCACTCACTTGCGAGGTGACATCAACATGATGATGGTTGGCGATCCCTCTGTTGCCAAGTCTCAACTCTTGAGAGCAATTATGAACATTGCTCCCTTGGCCATATCAACTACAGGCCGGGGTTCTTCTGGGGTTGGTTTGACAGCCGCAGTTACTTCAGATCAAGAAACAGGGGAAAGAAGGCTTGAAGCTGGGGCAATGGTGCTTGCTGACAGAGGTGTTGTCTGCATTGATGAATTTGACAAGATGAATGATCAAGATCGTGTTGCTATACATGAAGTTATGGAGCAGCAGACCGTGACTATTGCCAAAGCTGGTATCCATGCTTCACTGAATGCCCGATGCAGTGTGGTTGCAGCTGCAAATCCCATATATGGAACTTATGATCGTTCATTGACTCCAACCAAAAATATCGGACTCCCAGACTCCTTGCTTTCTCGATTTGATCTACTTTTTATTGTGTTGGATCAAATGGATCCTGATATTGATCGTCGAATATCAGAGCATGTCCTTCGTATGCATCGATTTCGTTCTGCTGTTGATGGAGGTGAGGCAGCACTTGATGGGAGCTCAAGATATGGAAGAGAAGATGAAGCTGATATGGACTCATCTGTCTTTGTCAAATATAACAGAATGTTACATGGGAAGAAAACTGGAAGAGGTCAAAAACGTGATACGCTTACAATTAAGTTTCTTAAAAAATTTATCCACTATGCTAAGCATAGGATTCAACCTGAACTGACTGATGAGGCATCTGAGAACATTGCCACGGCCTATGCTGAGCTCAGAAATTCAAGTTCAAATGCAAAGACTGGAGGAACACTTCCCATAACTGCCAGAACTTTAGAAACCATAATACGTCTCTCAACAGCTCATGCCAAATTGAAGTTGAGCAGAGAGGTTTCTAAGTCTGATGTTGAAGCAGCTTTGAAGGTTCTAAATTTTGCAATATATCACAAAGAACTGACAGAAATGGAGGAGCGTGAGCAAGAGAGGGAGAGAGAGCTGGACAGGAAGCGCAAGGCTGATCATGATGAAAATGATGGTCCTGATCGTGGTCCTAAAGATAGAAGAGGTCCTAAAGATAAAAGAGGGCCAACATCAACGGATGCCATGGAAGTAGATGATAACTCAGCAACTCATGCTGCTGTCGGACCCACCCCTGAAAGAATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCTGGAACAAATAACTATTGCAAACTTAGGGAATGTTATCAACAGAGGGCAAGATCCACCACCTTACAGTGCTGCAGATATACTACTCCTATTAGAGAGGTTGCAAGACGACAATAGAGTCATGATAACTGATGGAGTGGTGCATATGATATCATAA
Predicted protein sequences of Glyma.08g084400
>Glyma.08g084400.1.p sequence-type=predicted peptide transcript=Glyma.08g084400.1 locus=Glyma.08g084400 ID=Glyma.08g084400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDLSEEVRAAHKREFSDFLDQDVGKGIYMDEIKTLINHKRHRLIVNISDLHNFRDLGNRILRSPSEYMQPFCDAVTEATRAIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSEFIGSMVCIEGIVTKCSLVRPKVVKSVHFCPTTGSFTSREYRDITSNLGLPTGSVYPTRDENGNLLVTEFGLCKYKDHQTLSIQEVPENSAPGQLPRTVDVIAEDDLVDSCKPGDRVAIVGIYKALAGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYSAEDVKNIKEIAARDDAFDLLSNSLAPSIYGHSWIKKAVVLLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISEHVLRMHRFRSAVDGGEAALDGSSRYGREDEADMDSSVFVKYNRMLHGKKTGRGQKRDTLTIKFLKKFIHYAKHRIQPELTDEASENIATAYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKLKLSREVSKSDVEAALKVLNFAIYHKELTEMEEREQERERELDRKRKADHDENDGPDRGPKDRRGPKDKRGPTSTDAMEVDDNSATHAAVGPTPERIEEFNSLFNQHMHANRLEQITIANLGNVINRGQDPPPYSAADILLLLERLQDDNRVMITDGVVHMIS*

>Glyma.08g084400.2.p sequence-type=predicted peptide transcript=Glyma.08g084400.2 locus=Glyma.08g084400 ID=Glyma.08g084400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDLSEEVRAAHKREFSDFLDQDVGKGIYMDEIKTLINHKRHRLIVNISDLHNFRDLGNRILRSPSEYMQPFCDAVTEATRAIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSEFIGSMVCIEGIVTKCSLVRPKVVKSVHFCPTTGSFTSREYRDITSNLGLPTGSVYPTRDENGNLLVTEFGLCKYKDHQTLSIQEVPENSAPGQLPRTVDVIAEDDLVDSCKPGDRVAIVGIYKALAGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYSAEDVKNIKEIAARDDAFDLLSNSLAPSIYGHSWIKKAVVLLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISEHVLRMHRFRSAVDGGEAALDGSSRYGREDEADMDSSVFVKYNRMLHGKKTGRGQKRDTLTIKFLKKFIHYAKHRIQPELTDEASENIATAYAELRNSSSNAKTGGTLPITARTLETIIRLSTAHAKLKLSREVSKSDVEAALKVLNFAIYHKELTEMEEREQERERELDRKRKADHDENDGPDRGPKDRRGPKDKRGPTSTDAMEVDDNSATHAAVGPTPERIEEFNSLFNQHMHANRLEQITIANLGNVINRGQDPPPYSAADILLLLERLQDDNRVMITDGVVHMIS*






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