SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.08g082000

Feature Type:gene_model
Chromosome:Gm08
Start:6188267
stop:6192585
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g082000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G64520.1AT regulatory particle non-ATPase 12A JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0043161GO-bp proteasome-mediated ubiquitin-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0043248GO-bp proteasome assembly EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0005838GO-cc proteasome regulatory particle EnsemblGenomesN/AIEA
GO:0008541GO-cc proteasome regulatory particle, lid subcomplex EnsemblGenomesN/AIEA
KOG3151 KOG 26S proteasome regulatory complex, subunit RPN12/PSMD8 JGI N/AIEA
PTHR12387Panther 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 8 JGI N/AIEA
PF03399PFAM SAC3/GANP/Nin1/mts3/eIF-3 p25 family JGI N/AIEA

Expression Patterns of Glyma.08g082000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g082000
ParalogEvidenceComments
Glyma.05g127300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g082000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g08690 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g082000
>Glyma.08g082000.1 sequence-type=CDS polypeptide=Glyma.08g082000.1.p locus=Glyma.08g082000 ID=Glyma.08g082000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCCGAAGCTGAAAGAGGTTTCTCAGCTCTTCGATCGCTTCAAGGCTTCGTTTCTCCGGAACGACTTCGATAACTGTTCCAATCTCCTTTCTCAGCTAAAGGTGTTACTTACAGGTTTCAGAAGCCTGCCACCGTTGTTTGCAGATACACCTAATGCAGTTCATGAATTAACAATAGCAAGGGATATATATGAGCATGCTGTTGTCCTTAGTGTGAAAATTGAGGATCAAGATGCTTTCGAAAGGGATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTGCAATCGTCTTCCACCATCTCCTCAGGAGTACCCTATACTGGGTCTCAACCTGTTGAGACTACTTGTGCAGAATAGGATTGCTGAGTTCCATACTGAGTTGGAATTGCTTTCATCTGCTGCTCTTGAGAATCCTTGCATTAAGCATGCCGTGGAGTTAGAACAATCTTTTATGGAAGGGGCTTACAATCGTGTCTTGAGTGCACGGCAGACAGTGCCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAGAGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAGGATGCCAAGCAAATGTTGCTGTTCTCCTCAGACCAGGAACTCCTGGAATATATTAAAGAGGAGCATCCTGAGTGGGAGATTAAGAATGATAGTGTCTTTTTCCAAAAGGCAAAAGAATCTGCACCTTGCAAAGAAATACCCTCTCTGCAGCTCATCAACCAGACACTTAGTTATGCTAGGGAGTTGGAGAGGATTGTCTGA
Predicted protein sequences of Glyma.08g082000
>Glyma.08g082000.1.p sequence-type=predicted peptide transcript=Glyma.08g082000.1 locus=Glyma.08g082000 ID=Glyma.08g082000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDPKLKEVSQLFDRFKASFLRNDFDNCSNLLSQLKVLLTGFRSLPPLFADTPNAVHELTIARDIYEHAVVLSVKIEDQDAFERDFFQLKPYYTDACNRLPPSPQEYPILGLNLLRLLVQNRIAEFHTELELLSSAALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHDTYVYFMDLLAKTVRDEIAGCSEKAYDYLSIKDAKQMLLFSSDQELLEYIKEEHPEWEIKNDSVFFQKAKESAPCKEIPSLQLINQTLSYARELERIV*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo