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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G37930.1 | AT | Protein with RING/U-box and TRAF-like domains | JGI | N/A | IEA |
| GO:0006511 | GO-bp | ubiquitin-dependent protein catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006511 | GO-bp | ubiquitin-dependent protein catabolic process | JGI | N/A | IEA |
| GO:0007275 | GO-bp | multicellular organism development | EnsemblGenomes | N/A | IEA |
| GO:0007275 | GO-bp | multicellular organismal development | JGI | N/A | IEA |
| GO:0016567 | GO-bp | protein ubiquitination | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | JGI | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| GO:0008270 | GO-mf | zinc ion binding | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0061630 | GO-mf | ubiquitin protein ligase activity | EnsemblGenomes | N/A | IEA |
| KOG3002 | KOG | Zn finger protein | JGI | N/A | IEA |
| PTHR10315 | Panther | SEVEN IN ABSENTIA HOMOLOG | JGI | N/A | IEA |
| PTHR10315:SF3 | Panther | JGI | N/A | IEA | |
| PF03145 | PFAM | Seven in absentia protein family | JGI | N/A | IEA |
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Glyma.08g079600 not represented in the dataset |
Glyma.08g079600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.05g124500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g08430 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g079600.1 sequence-type=CDS polypeptide=Glyma.08g079600.1.p locus=Glyma.08g079600 ID=Glyma.08g079600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTGAAAATCTCACTTGGTGGATACGATGATGGGGAAGGACCCAGCAACCGAACCCATAAGCGACGCAGGGAAGATGATGATGACGACGACGAAGAAGAGCAACAACAACAACGAAGCTTTGAGATGGTGGACCCTTCAATAGGAACTCAAGAGAACGAAGATCATGCTGCTCCATCCAATGATGGATCGAATTCTAACGGAAATGGGGCTGGAACCAGTACCCGGGATAGGTCCGTTCCTATCTTCGTTTCCGACCCTGATGTCCTTGATTGCTGCATTTGCTATGAACCCTTGACTTCCCCTGTGTTCCAGTGTGAGAATGGACATATTGCTTGCTCTATTTGCTGTGTGAGACTCAGTAACAAGTGTCCCATGTGTTCAATGCCCATTGGGTATAACCGTTGCCGGGCTATTGAGAAGGTCTTGGAGTGTATTAAAATGTCATGCCCGAATGCAAATTATGGCTGCAAAGAGACACTTAGTTACAGCAAGAAAAACGAACATGAGAAGGAATGCATCTATCTGCCATGTTCATGCCCTTTTACTGGTTGTGATTTTATTGCCTCATCCAAGGAGTTATTCCTCCACTTTAGCCATAGACATGTAGGCTCTGGAACACAGTTTACATATGATAAATTTTTCACTGTCTTCTTAAGTATTAACCAGAGAACAGTTGTTCTTAAAGAGAAAAGTGATGGTAATCTGTTCGTTGTTCACAATAACCTCGAGCATCTGGGGAACATAGTCCGCATTAGCTGCATTGGTCCCAAGTCCACGACAGAGTTTCAGTATGAAGTCTTGGCTAGGCATCAAGGAAACGCTTTGATTCTACAATCTTTTACCAAGATTGTGCAAGGGCAATATACTGATGCTCCATCTAGTACGTTCCTTTTGATTCCGTCTTGTTTGTTTGGCTCTCCACATCTGAAACTGGATATTCGCATAAAGTCACACCATTAA
>Glyma.08g079600.1.p sequence-type=predicted peptide transcript=Glyma.08g079600.1 locus=Glyma.08g079600 ID=Glyma.08g079600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVKISLGGYDDGEGPSNRTHKRRREDDDDDDEEEQQQQRSFEMVDPSIGTQENEDHAAPSNDGSNSNGNGAGTSTRDRSVPIFVSDPDVLDCCICYEPLTSPVFQCENGHIACSICCVRLSNKCPMCSMPIGYNRCRAIEKVLECIKMSCPNANYGCKETLSYSKKNEHEKECIYLPCSCPFTGCDFIASSKELFLHFSHRHVGSGTQFTYDKFFTVFLSINQRTVVLKEKSDGNLFVVHNNLEHLGNIVRISCIGPKSTTEFQYEVLARHQGNALILQSFTKIVQGQYTDAPSSTFLLIPSCLFGSPHLKLDIRIKSHH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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