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Report for Sequence Feature Glyma.08g079100

Feature Type:gene_model
Chromosome:Gm08
Start:6026187
stop:6027296
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g079100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06860.1AT polygalacturonase inhibiting protein 1 JGI N/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
PTHR24420Panther LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE JGI N/AIEA
PF00560PFAM Leucine Rich Repeat JGI N/AIEA
PF08263PFAM Leucine rich repeat N-terminal domain JGI N/AIEA

Proteins Associated with Glyma.08g079100
LocusGene SymbolProtein Name
PGIP3 polygalacturonase inhibitor 3 gene

Expression Patterns of Glyma.08g079100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g079100 not represented in the dataset
Glyma.08g079100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g079100
ParalogEvidenceComments
Glyma.05g123700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g079100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments


Coding sequences of Glyma.08g079100
>Glyma.08g079100.1 sequence-type=CDS polypeptide=Glyma.08g079100.1.p locus=Glyma.08g079100 ID=Glyma.08g079100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAAAGTTAAGCATTCTCTTCCTCCTAGTCTTATCCTTCAGTTCTGTACTCTCAGAACTATGCAACCCACAAGACAAACAAGCCCTACTCCAAATCAAGAAAGATCTTGGAAACCCAACCACTCTCTCCTCATGGCTTCTAACCACTGATTGCTGCAACAGAACATGGCTAGGTGTTTCATGCGACACCGACACCCAAACATACCGCGTCAACGACCTCGACCTCTCCGATCTTAACCTCCCCAAACCCTACTCTATTCCTCCCTCCATAGCCAACCTTCCCTACTTGAATTTTCTTTCCATTAGCAGGACCCCAACCCTAATCGGTCAAATCCCCTCAGCCATCGCTAAACTCACCCAACTCCGTTATCTTTATATCACCCACACCAATGTCTCCGGCCCTATACCAGATTTCTTGTCTCAAATCAAAACCTTAGTCACCCTCGATTTCTCCTACAACACCCTCTCCGGCAAACTCCCCGCCTCGCTCTCTTCGCTGCCCAATCTCGTCGGAATCACCTTCGACGGCAACCAAATCTCCGGCGCCATCCCGGACTCGTACGGCTCATTCTCGAAGCTTTTCACGTCGATGACGATCTCCCGCAACCGCCTCACAGGGAAGATTCCGGCGACGTTCGCGAATCTGAACCTGGCGTTCGTGGACTTGTCTCGGAACATGCTGGAGGGTGATGCGTCGGTGTTGTTTGGGACGGAGAAAAACACGCAGAAGATACTTCTGGCGAAGAACATGCTTGCTTTTGATCTGGGGAAAGTAGGCTTGTCTAAGAACTTGAACGGCTTGGATCTTAGGAACAACCGTATTTATGGGACGCTACCTCAGGGACTTACGGCGCTTAAGTTTCTGCACAGTTTTAATGTGAGCTTCAATGATCTTTGTGGTGAGATTCCGCAGGGTGGGAACATGCAACGTTTTGACGTATCTTCTTATGCCAATAACAAGTGTTTGTGTGGCTCTCCTCTTCCACCATGCACTTAA
Predicted protein sequences of Glyma.08g079100
>Glyma.08g079100.1.p sequence-type=predicted peptide transcript=Glyma.08g079100.1 locus=Glyma.08g079100 ID=Glyma.08g079100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSKLSILFLLVLSFSSVLSELCNPQDKQALLQIKKDLGNPTTLSSWLLTTDCCNRTWLGVSCDTDTQTYRVNDLDLSDLNLPKPYSIPPSIANLPYLNFLSISRTPTLIGQIPSAIAKLTQLRYLYITHTNVSGPIPDFLSQIKTLVTLDFSYNTLSGKLPASLSSLPNLVGITFDGNQISGAIPDSYGSFSKLFTSMTISRNRLTGKIPATFANLNLAFVDLSRNMLEGDASVLFGTEKNTQKILLAKNMLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTALKFLHSFNVSFNDLCGEIPQGGNMQRFDVSSYANNKCLCGSPLPPCT*






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