Glyma.08g078900

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Report for Sequence Feature Glyma.08g078900

Feature Type:	gene_model
Chromosome:	Gm08
Start:	6012234
stop:	6013469
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g078900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06860.1	AT	polygalacturonase inhibiting protein 1	JGI	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
PTHR24420	Panther	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE	JGI	N/A	IEA
PF00560	PFAM	Leucine Rich Repeat	JGI	N/A	IEA
PF08263	PFAM	Leucine rich repeat N-terminal domain	JGI	N/A	IEA

Expression Patterns of Glyma.08g078900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.08g078900

Paralog	Evidence	Comments
Glyma.05g123700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g078900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g08360	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.08g078900

Limit To All Plant Sequences

>Glyma.08g078900.1 sequence-type=CDS polypeptide=Glyma.08g078900.1.p locus=Glyma.08g078900 ID=Glyma.08g078900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCACACTCAAGCACTCTCTTTCTCTTCCTCATAGTTCTATTCTTCACTCCAGCACTCTCAGAACTATGCAACCCACAAGACAAAGAAGCCCTCCTTCAAATCAAGAAAGAGTTCGGTAACCCTACCACTCTCTCTTCCTGGCTCCCAACCTCTGATTGCTGCAACAACAACTGGGTAGGTGTCTCATGCGCCAACAAGACCCAATCTTACCGCGTCAACCACCTCGACCTCAACGACCTTAACCTCCCCAAACCCTACCCTATCCCCCCCTCCGTAGGTAACCTTCCCTACCTCAATTTTCTTTCCATCACCAACACCAACAACCTCGTTGGCACAATACCCCCTACCATCACCAAACTCACCATGCTCCGTGAACTCCAAATCAGATTCACCAACGTGTCCGGCGAGATACCCCATTTTTTGTCCCAAATCAAAACCCTAGAATCAATCATCTTCCACTACAACAACTTCTCCGGCAACCTCCCTCCCTGGCTCCCTTCTCTCCCCAACCTCTACAGAGTCTCCTTAGACGGAAACCGCATCTCCGGCACCATCCCGGACTCCTTCGGCTCCTTCTCGGATTCACTGAAGTTGATGACCTTCTCCGACAACCGCCTCACCGGGGAGATTCCGGCGACGTTGGCGAAGCTGGACTTTGATTTCGTGGACTTGTCTCAGAACATGCTGGAGGGTGATGCGTCGGTGCTGTTCGGGTCGGAGAAACACACGCTGCAGATAAATCTGGCGAACAACTCGTTTGCTTTTGATTTCGGAAAAGTAAGGGTGTCAAAGACCTTGTTGATTTTGTATCTTAGTCACAATCGTTTATATGGGGCGCTGCCTGAGGGACTTACGTCGCTTAAGAATCTGGGCACGTTTGATGTGAGCTACAATGAATTGTGTGGTAAGATTCCACGGGGTGGTAGGTTGCAAAAAATTGATGTTTCTTCCTATTCTCATAACAAGTGCTTGTGCGGATCTCCGCTTCCAAAGTGCAAGCACTTATAG

Predicted protein sequences of Glyma.08g078900

Limit To All Plant Sequences

>Glyma.08g078900.1.p sequence-type=predicted peptide transcript=Glyma.08g078900.1 locus=Glyma.08g078900 ID=Glyma.08g078900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSHSSTLFLFLIVLFFTPALSELCNPQDKEALLQIKKEFGNPTTLSSWLPTSDCCNNNWVGVSCANKTQSYRVNHLDLNDLNLPKPYPIPPSVGNLPYLNFLSITNTNNLVGTIPPTITKLTMLRELQIRFTNVSGEIPHFLSQIKTLESIIFHYNNFSGNLPPWLPSLPNLYRVSLDGNRISGTIPDSFGSFSDSLKLMTFSDNRLTGEIPATLAKLDFDFVDLSQNMLEGDASVLFGSEKHTLQINLANNSFAFDFGKVRVSKTLLILYLSHNRLYGALPEGLTSLKNLGTFDVSYNELCGKIPRGGRLQKIDVSSYSHNKCLCGSPLPKCKHL*

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