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Report for Sequence Feature Glyma.08g077800

Feature Type:gene_model
Chromosome:Gm08
Start:5916151
stop:5918722
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g077800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G17980.1AT Sec1/munc18-like (SM) proteins superfamily JGI N/AIEA
GO:0006904GO-bp vesicle docking involved in exocytosis EnsemblGenomesN/AIEA
GO:0006904GO-bp vesicle docking involved in exocytosis JGI N/AIEA
GO:0016192GO-bp vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0016192GO-bp vesicle-mediated transport JGI N/AIEA
KOG1301 KOG Vesicle trafficking protein Sly1 (Sec1 family) JGI N/AIEA
PTHR11679Panther VESICLE PROTEIN SORTING-ASSOCIATED JGI N/AIEA
PTHR11679:SF2Panther SEC1 FAMILY DOMAIN-CONTAINING PROTEIN 1 JGI N/AIEA
PF00995PFAM Sec1 family JGI N/AIEA

Expression Patterns of Glyma.08g077800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g077800
ParalogEvidenceComments
Glyma.05g122800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g077800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g08260 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g077800
>Glyma.08g077800.1 sequence-type=CDS polypeptide=Glyma.08g077800.1.p locus=Glyma.08g077800 ID=Glyma.08g077800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTCTGAATCTCCGTCAGAAGCAAACAGAATGCATCGCGCGCATGCTGAACCTGAACCAGCCCTTAAACGCCGCCGGAACCGCGAACGAAGATGTCTACAAGATCCTCATCTACGACAAGTTCTGCCAGAACATCCTTTCCCCATTGATCCACGTCAAGGACCTCCGCAAGCACGGCGTGACCCTCTACTTCCTCATCGACAAGGATCGAAAACCTGTTCACGACGTTCCCGCGGTTTATTTCGTCCAACCCAACGTTTCCAACGTGCAACGCATCGTTTCGGACGCGTCCAAATCGCTCTACCAGAGCCTCCACCTCAACTTCTCCACCTCCATCCCGCGCCCCCTCCTCGAAGACCTCGCCGCCGGAACCCTAAATTCGGATTCGATTCAGCGAGTCTCGAAGGTTCACGATCAATATCTGGAATTTGTAACCCTAGAGGATAACCTTTTTTCACTGGCCCACAAGCCTTGTTATGTTCAACTCAACGATCCTTCCGCTGGGGACAAGGAAATTGAGGAGCTTGTTGAGAAGATCGTTGGTGGGTTGTTTTGTGTGTTGGCCACTCTTGCGGTTGTGCCGGTGATTCGGTGCCCGCGTGGCGGTCCTGCGGAGATGGTGGCTTCTGCATTGGATCAGCGGATTAGGGATCATTTGTTGTCCAAGAATAACTTGTTTACTGAGGGTGGGAACTTTGTGAGCTCGTTTCAGCGTCCTGTGTTGTGTATTTTTGACCGGAATTTCGAGTTGCCGGTGGCGATTCAGCATGATTTTCGCTACCGGCCGCTTGTTCATGATGTGCTTGGGTTGAGGCTGAATAGGCTGAGTGTGCAGGGGGAGAAGGGTGGGATGAGGTCTTATGAGTTGGACAGTGCTGATTCGTTTTGGGTTGCAAATGGGTCGCTGGAGTTTCCGGAGGTTGCGGTGGAGATTGAGACGCAGTTGAATAAGTATAAGAAGGATGTGGATGAGGTGAACAAGAGGACTGGCGGGACTCATGGCGCGGAGTTTGATGGGACGGATTTGATTGGGAACACGAAGCATTTGATGAATGCTGTGAATTCTCTGCCTGAGTTGACTGAGAGGAAACAGGTGATTGATAAGCATACCAACATTGCGACTGTGTTGTTGGGCGAGATCAAGGAGAGGTCTCTTGATTCTTATGCTAAGAAGGAGAATGACATGATGGTTAGAGGGGGCATTGAACGGGGTGACCTGCTTGGTGTGCTCAGAGGGAAGGGAACGAAGATGGATAAGCTTAGGTTTGCCATCATATATCTCATTTCATCGGAAACCATTAATCTGTCGGAAGTGGAAGCTGTGGAAGCGGCACTGAGAGAGTCTGAGGTTGATACTGCTGCTTTTCAGTATGTGAAGAAGATCAAGTCGTTGAATGTGTCGTTGGCATCGGCAAATTCTGCCAGCAGAAGTAATATTGTTGATTGGGCTGAGAAGCTCTATGGGCAGTCAATTAGTGCAGTGACGGCTGGTGTCAAAAATCTTTTGTCTAATGACAGGCAGCTAGCATTGGCAAGGACAGTCGAGGCCTTGATTGAAGGGAGGACAAATCCTGAAACAGATGTGTACCTTTCGTTTGATCCTCGTGCTCCGAAGTCTGGTTCGGGAGCAAGTAGCAGCCATTTGAAAGGGCCATTTAAGGAAGCAATTGTGTTCATGATTGGTGGTGGTAATTACGTTGAATATTGCAGTCTGCAAGAGCTTGCACAACATCAGCAACCTGCCAAACATATTATATATGGAACAACAGAAATGCTAACTGGAGTTGACTTTGTAGAGCAGCTAACATTGTTGGGGCAGAAGATGGGTTTGGGTAATGTTGGTTCTAGTTCTACCCCAGCTCAGTAG
Predicted protein sequences of Glyma.08g077800
>Glyma.08g077800.1.p sequence-type=predicted peptide transcript=Glyma.08g077800.1 locus=Glyma.08g077800 ID=Glyma.08g077800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSLNLRQKQTECIARMLNLNQPLNAAGTANEDVYKILIYDKFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFVQPNVSNVQRIVSDASKSLYQSLHLNFSTSIPRPLLEDLAAGTLNSDSIQRVSKVHDQYLEFVTLEDNLFSLAHKPCYVQLNDPSAGDKEIEELVEKIVGGLFCVLATLAVVPVIRCPRGGPAEMVASALDQRIRDHLLSKNNLFTEGGNFVSSFQRPVLCIFDRNFELPVAIQHDFRYRPLVHDVLGLRLNRLSVQGEKGGMRSYELDSADSFWVANGSLEFPEVAVEIETQLNKYKKDVDEVNKRTGGTHGAEFDGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMVRGGIERGDLLGVLRGKGTKMDKLRFAIIYLISSETINLSEVEAVEAALRESEVDTAAFQYVKKIKSLNVSLASANSASRSNIVDWAEKLYGQSISAVTAGVKNLLSNDRQLALARTVEALIEGRTNPETDVYLSFDPRAPKSGSGASSSHLKGPFKEAIVFMIGGGNYVEYCSLQELAQHQQPAKHIIYGTTEMLTGVDFVEQLTLLGQKMGLGNVGSSSTPAQ*






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