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Report for Sequence Feature Glyma.08g073900

Feature Type:gene_model
Chromosome:Gm08
Start:5649582
stop:5651669
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g073900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G10160.1AT Thioesterase superfamily protein JGI N/AIEA
GO:0006633GO-bp fatty acid biosynthetic process EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0016836GO-mf hydro-lyase activity EnsemblGenomesN/AIEA
PF07977PFAM FabA-like domain JGI N/AIEA
FASYN-ELONG-PWYSoyCyc9 fatty acid elongation -- saturated Plant Metabolic Network ISS
PWY-5156SoyCyc9 superpathway of fatty acid biosynthesis II (plant) Plant Metabolic Network ISS
PWY-5971SoyCyc9 palmitate biosynthesis II (bacteria and plants) Plant Metabolic Network ISS
PWY-5973SoyCyc9 cis-vaccenate biosynthesis Plant Metabolic Network ISS
PWY-5989SoyCyc9 stearate biosynthesis II (bacteria and plants) Plant Metabolic Network ISS
PWY-7388SoyCyc9 octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) Plant Metabolic Network ISS
GN7V-53944SoyCyc9-rxn fatty-acyl-CoA synthase Plant Metabolic Network ISS

Expression Patterns of Glyma.08g073900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g073900 not represented in the dataset
Glyma.08g073900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g073900
ParalogEvidenceComments
Glyma.05g118900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g073900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g07871 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g073900
>Glyma.08g073900.1 sequence-type=CDS polypeptide=Glyma.08g073900.1.p locus=Glyma.08g073900 ID=Glyma.08g073900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACAACAACAGTCTCTGCACTCTCCAACACCTTCTTCATCTCTCAGATTTCCCAGCTCGAGATTTCAGCCTCTGGCTACCCAGTTGAGGAAAACAACCTGCTACAACATTTTTCTTCACCTTCCATTTTCTTACCCACGTGGTTTTCGTGTTTTGCCATTGTTGCTGGGTACCCTGCGTTTCCAACATCATTGGACATCAATAAGATTCGTGACATTCTGCCGCACAGGTTTCCATTTCTTCTAGTGGATAGAGTGATTGAACACAATCCTGGAGTTTCTGCAGTGGCCATAAAGAATGTGACAATAAATGACAACTTTTTTCCTGGGCATTTTCCTGAAAGACCAATCATGCCTGGTGTTCTCCTGGTTGAGGCAATGGCACAGGTTGGTGGCTTGGTTATGTTGCAACCTGAAATTGGAGGTTCTCGCAATAATTTCTTCTTTGCTGGAATAGACAAAGTGCGATTTAGGAAGCCAGTGATTGCAGGAGACACTTTAGTTATGAGAATGACACTTATCAAACTGCAAAAGCGATTTGGAATAGCAAAGATGGAAGGGAAGGCATATGTTGGAGGTGAAGTTGTGTGTGAGGGTGAGTTTCTGATGGCAACTGGGAGCGAATAA
Predicted protein sequences of Glyma.08g073900
>Glyma.08g073900.1.p sequence-type=predicted peptide transcript=Glyma.08g073900.1 locus=Glyma.08g073900 ID=Glyma.08g073900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTTTVSALSNTFFISQISQLEISASGYPVEENNLLQHFSSPSIFLPTWFSCFAIVAGYPAFPTSLDINKIRDILPHRFPFLLVDRVIEHNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLLVEAMAQVGGLVMLQPEIGGSRNNFFFAGIDKVRFRKPVIAGDTLVMRMTLIKLQKRFGIAKMEGKAYVGGEVVCEGEFLMATGSE*






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