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Report for Sequence Feature Glyma.08g070900

Feature Type:gene_model
Chromosome:Gm08
Start:5412358
stop:5416024
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g070900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G17840.1AT white-brown complex homolog protein 11 JGI N/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016887GO-mf ATPase activity EnsemblGenomesN/AIEA
GO:0016887GO-mf ATPase activity JGI N/AIEA
GO:0042626GO-mf ATPase activity, coupled to transmembrane movement of substances EnsemblGenomesN/AIEA
KOG0061 KOG Transporter, ABC superfamily (Breast cancer resistance protein) JGI N/AIEA
PTHR19241Panther ATP-BINDING CASSETTE TRANSPORTER JGI N/AIEA
PTHR19241:SF20Panther JGI N/AIEA
PF00005PFAM ABC transporter JGI N/AIEA
PF01061PFAM ABC-2 type transporter JGI N/AIEA

Expression Patterns of Glyma.08g070900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g070900
ParalogEvidenceComments
Glyma.13g043000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g070900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g07550 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g070900
>Glyma.08g070900.1 sequence-type=CDS polypeptide=Glyma.08g070900.1.p locus=Glyma.08g070900 ID=Glyma.08g070900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCTCTATACTTCAACCTAATGCTAGTGATTGTGAATCAAACAATAGCTCAAAAATTCTGCCACCCCTTTTAGAATTTGATACCTCATTTGAGGTAGAATTAGAAAGGATCAAATCAGTAGAAACTGGTAAAGATGGTGAGGAAGATCAAGAGGAGGGTGTTTTCTTGACGTGGGAGGACTTGTGGGTGACAGTTTCAAATGGAAAAAATGGAAGGAAACCAATACTTCAGGGTCTAAAAGGCTATGCCAAACCAGGGAAACTCTTGGCCATAATGGGTCCCTCTGGCTGTGGCAAGTCAACACTTCTTGATGCTTTAGCAGGAAGGTTAGGTTCAAAGACAAAGCAAACAGGGAAGATCCTAATCAATGGCAGGAAACAAGCATTAGCTTATGGAGCATCTGCATATGTAACAGAAGATGATACTATTTTGACAACTCTAACGGTTAAAGAAGCAGTATACTACTCAGCTAACCTTCAATTGCCAGATTCCATGTCAAAGTCAGAAAAACAGGAGAGAGCAGATTTCACAATCAGAGAAATGGGTCTGCAAGATGCCATTAACACCAGAATTGGAGGGTGGGGATCTAAAGGCGCTAGTGGCGGGCAAAAGAGGAGAGTTAGCATTTGCATTGAGATCTTAACACATCCCAGGCTTCTCTTCCTTGATGAACCCACTAGTGGACTTGATAGTGCAGCTTCTTATCATGTGATGAGTAGAATATCCAACTTGAACAAAAAGGATGGCATTCAAAGGACTATTATTGCATCAATCCATCAGCCAAGTAATGAAATTTTTAAACTTTTTCCCAACCTTTGCCTTCTCTCTTCTGGGAAAACAGTTTACTTTGGACCTACTTCTGCTGCAAACAAGTTTTTCTCATCAAATGGTTTTCCATGCTCAAGTCTTCATAGTCCTTCTGATCACTTCGTAAAAACCATTAACAAGGATTTTGAACGGGACCCAGAGAAAGGAATAGCTGGAGGGCTAAGCACAGAAGAAGCAATTCATGTTCTTGCAAAATCATATGATTCATCTGAGATTTGTCACCAAGTTCAAAATGAAATAGCCCAAATAAAGAAAAGGGACTCGGACGCAATGGATAAGAAATGCCATGCTGACTTTTCAACTCAATGCCTCATTCTTACAAGAAGATCTTTTCTGAACATGTACCGCGAAGTAGGCTATTACTGGTTACGCCTACTCATCTATGGTGCCTTGGCATTAAGTCTTGGTACCTTGTTCTTTGACATTGGTTCAAGCAGTGAATCAATTCAGGCCAGAGGTTCACTGCTTGTGTTTGTTGTTACATTCCTGACCTTCATAACTGTTGGAGGTTTCCCTTCTTTTGTGGAGGAAATGAAGGTGTTTGAAAGAGAAAGACTAAATGGGCATTATGGTGTCACTGCATTTACCATTGGAAACACATTATCTTCTGTTCCATTTTTGCTGTTGATGTCATTGATCCCAGGAGCACTGGTTTATTACCTAGTTGGACTTCACCAAGGACATGAACATTTTGTGTACTTTATATTTATGCTTTTCACTTCCCTCTTCTTGGTTGAGGGTCTCATGATGATTGTTGCAAGCATGGTTCCCAATTTCTTGATGGGTATAATCGTTGGTTCGGGAATTTTGGGCATAATGATGTTAGATGGTGGGTTCTATAGGCTTCCAAGTGACATTCCTAAGCCATTTTGGAGATACCCTTTGCACTACATTTCCTTCCACAAGTATGCCTACCAAGGATTGTTCAAGAATGAATTTCAAGGTCTAACATTCCCTAGCAATCAAGTTGGAGCACACATGACAATTAGTGGTGAACATATTCTGAGACACATATGGCAAATGGAAGTTAATTATTCAAAGTGGGTGGATGTTGGTATCTTGGTAGGAATGGCAGTTCTATATCGAATTCTATTTATGGTTATCATCAAGAGCTTTGAGAAGTTGAAGTCTGTTGCTACAGCAATTAATTGTCCCCAAGCAAACTTTGGGTTCACCAAAGTGACAAGGAGCAGTGAAATTGATTAG
Predicted protein sequences of Glyma.08g070900
>Glyma.08g070900.1.p sequence-type=predicted peptide transcript=Glyma.08g070900.1 locus=Glyma.08g070900 ID=Glyma.08g070900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSILQPNASDCESNNSSKILPPLLEFDTSFEVELERIKSVETGKDGEEDQEEGVFLTWEDLWVTVSNGKNGRKPILQGLKGYAKPGKLLAIMGPSGCGKSTLLDALAGRLGSKTKQTGKILINGRKQALAYGASAYVTEDDTILTTLTVKEAVYYSANLQLPDSMSKSEKQERADFTIREMGLQDAINTRIGGWGSKGASGGQKRRVSICIEILTHPRLLFLDEPTSGLDSAASYHVMSRISNLNKKDGIQRTIIASIHQPSNEIFKLFPNLCLLSSGKTVYFGPTSAANKFFSSNGFPCSSLHSPSDHFVKTINKDFERDPEKGIAGGLSTEEAIHVLAKSYDSSEICHQVQNEIAQIKKRDSDAMDKKCHADFSTQCLILTRRSFLNMYREVGYYWLRLLIYGALALSLGTLFFDIGSSSESIQARGSLLVFVVTFLTFITVGGFPSFVEEMKVFERERLNGHYGVTAFTIGNTLSSVPFLLLMSLIPGALVYYLVGLHQGHEHFVYFIFMLFTSLFLVEGLMMIVASMVPNFLMGIIVGSGILGIMMLDGGFYRLPSDIPKPFWRYPLHYISFHKYAYQGLFKNEFQGLTFPSNQVGAHMTISGEHILRHIWQMEVNYSKWVDVGILVGMAVLYRILFMVIIKSFEKLKSVATAINCPQANFGFTKVTRSSEID*






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