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Report for Sequence Feature Glyma.08g067500

Feature Type:gene_model
Chromosome:Gm08
Start:5180095
stop:5182892
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g067500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G64380.1AT Inositol monophosphatase family protein JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0005986GO-bp sucrose biosynthetic process EnsemblGenomesN/AIEA
GO:0006000GO-bp fructose metabolic process EnsemblGenomesN/AIEA
GO:0006002GO-bp fructose 6-phosphate metabolic process EnsemblGenomesN/AIEA
GO:0006094GO-bp gluconeogenesis EnsemblGenomesN/AIEA
GO:0016311GO-bp dephosphorylation EnsemblGenomesN/AIEA
GO:0030388GO-bp fructose 1,6-bisphosphate metabolic process EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016791GO-mf phosphatase activity EnsemblGenomesN/AIEA
GO:0042132GO-mf fructose 1,6-bisphosphate 1-phosphatase activity EnsemblGenomesN/AIEA
GO:0042132GO-mf fructose 1,6-bisphosphate 1-phosphatase activity JGI N/AIEA
GO:0042578GO-mf phosphoric ester hydrolase activity JGI N/AIEA
KOG1458 KOG Fructose-1,6-bisphosphatase JGI N/AIEA
PTHR11556Panther FRUCTOSE-1,6-BISPHOSPHATASE-RELATED JGI N/AIEA
PTHR11556:SF7Panther FRUCTOSE-1,6-BISPHOSPHATASE, CHLOROPLASTIC JGI N/AIEA
PF00316PFAM Fructose-1-6-bisphosphatase JGI N/AIEA
CALVIN-PWYSoyCyc9 Calvin-Benson-Bassham cycle Plant Metabolic Network ISS
GLUCONEO-PWYSoyCyc9 gluconeogenesis I Plant Metabolic Network ISS
GLYCOLYSISSoyCyc9 glycolysis I (from glucose 6-phosphate) Plant Metabolic Network ISS
PHOTOALL-PWYSoyCyc9 oxygenic photosynthesis Plant Metabolic Network ISS
PWY-5484SoyCyc9 glycolysis II (from fructose 6-phosphate) Plant Metabolic Network ISS
PWY-7345SoyCyc9 superpathway of anaerobic sucrose degradation Plant Metabolic Network ISS
SUCSYN-PWYSoyCyc9 sucrose biosynthesis I (from photosynthesis) Plant Metabolic Network ISS
GN7V-43841SoyCyc9-rxn fructose-bisphosphatase Plant Metabolic Network ISS

Expression Patterns of Glyma.08g067500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g067500
ParalogEvidenceComments
Glyma.07g182300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g067500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g07200 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g067500
>Glyma.08g067500.1 sequence-type=CDS polypeptide=Glyma.08g067500.1.p locus=Glyma.08g067500 ID=Glyma.08g067500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGTCAACAGCAGCACCACCACTCTATCAACTTGTGAGCTTCAAGCCAAAGCTTCAAACTTTCCCTTCAAAATCTCAACTTTGCCCCTTAGGGACCCCTTTCTGCAGACTAGAAATGGCTTCAATTTCTGGGTTTGGGCTGAAACCCCTGAGGGCTGTGAGTGTTTCTTCTTCATCTTCTGCATCAAGTGATGATGGATTTGTCACACTGACAGAGTATGTGGGGAAGGAAGGAATGAATGTGAAAGATGATTTGGTGGTGTTGCTTGATCATATTCAGTATGCTTGCAAGAAAATTGCAGCACTTGTGGCTTCTCCTTTCAATTACAGCCTTGGCAAACAAACTGCTCTTGGTTCTGTTGGTTCTGATAGGGATGCTCCAAAGCCTCTTGATATTGTCTCGAATGAAATTATCTTGTCATCACTCCGAAAATCCGGAAGAGTTGCTGTCATGGCTTCAGAAGAAAATGACGCACCGACTTGGATAAGTGACGATGGTCCATATGTGGTTGTAACAGATCCCCTAGATGGTTCTCGAAATATTGATGCATCCATTCCAACAGGCACGATTTTTGGTATTTATAAGCGCCTTGAGGAACTAGATGATCTACCCACAGAGGACAAAGCTATGCTGAATTCACTCCAGAGTGGAAGTAGGCTGATTGCTGCTGCTTATGTTCTCTATTCTTCTGCAACTATACTCTGCATCACCTTTGGTTCTGGAACACAGGCATTCACTCTTGATCATTCAACAGGAGACTTTATTCTCACAAATCCAAGCATCAAAATTCCTCCCCGTGGTCAAATTTATTCAGTAAATGATGCACGATATTTTGACTGGCCTGAAGGTTTAAGGCAATATATAGACACTGTTAGACAAGGGAAAGGTAGATACCCCAAGAAGTACTCAGCCAGGTATATATGTTCTCTGGTGGCAGATCTCCACAGGACTTTGTTGTATGGTGGTGTGGCAATGAATCCAAGGGACCATCTTCGTCTTGTTTATGAAGCAAACCCTCTTAGTTTCATTGTAGAGCAGGCTGGTGGGAGAGGGTCTGATGGCAAAAATAGGATTCTTTCCCTTCAACCAGTTAAACTTCACCAAAGACTTCCTCTATTTTTGGGAAGCTTGGAAGACATGGAAGAGTTAGAAAGTTATGGGGATATCCAACAAAAAGTTAATCCTGGTTATGAGGTTTGA
Predicted protein sequences of Glyma.08g067500
>Glyma.08g067500.1.p sequence-type=predicted peptide transcript=Glyma.08g067500.1 locus=Glyma.08g067500 ID=Glyma.08g067500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQSTAAPPLYQLVSFKPKLQTFPSKSQLCPLGTPFCRLEMASISGFGLKPLRAVSVSSSSSASSDDGFVTLTEYVGKEGMNVKDDLVVLLDHIQYACKKIAALVASPFNYSLGKQTALGSVGSDRDAPKPLDIVSNEIILSSLRKSGRVAVMASEENDAPTWISDDGPYVVVTDPLDGSRNIDASIPTGTIFGIYKRLEELDDLPTEDKAMLNSLQSGSRLIAAAYVLYSSATILCITFGSGTQAFTLDHSTGDFILTNPSIKIPPRGQIYSVNDARYFDWPEGLRQYIDTVRQGKGRYPKKYSARYICSLVADLHRTLLYGGVAMNPRDHLRLVYEANPLSFIVEQAGGRGSDGKNRILSLQPVKLHQRLPLFLGSLEDMEELESYGDIQQKVNPGYEV*






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