SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G74520.1 | AT | HVA22 homologue A | JGI | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0003676 | GO-mf | nucleic acid binding | EnsemblGenomes | N/A | IEA |
| GO:0008270 | GO-mf | zinc ion binding | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| KOG1726 | KOG | HVA22/DP1 gene product-related proteins | JGI | N/A | IEA |
| PTHR12300 | Panther | HVA22-LIKE PROTEINS | JGI | N/A | IEA |
| PTHR12300:SF11 | Panther | JGI | N/A | IEA | |
| PF03134 | PFAM | TB2/DP1, HVA22 family | JGI | N/A | IEA |
|
Glyma.08g066700 not represented in the dataset |
Glyma.08g066700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.07g183500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g07120 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g066700.1 sequence-type=CDS polypeptide=Glyma.08g066700.1.p locus=Glyma.08g066700 ID=Glyma.08g066700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCTTCTCTCTGGTTCCTTAAACTGTCCCTCAAATGCCTTGATCACCTCGCATGGCCTCTTCTTGCTTTGGGGTATCCTCTATGTGCTTCCGTACAAGCAATTGAGACTGATTCCAATAAAGAAACTAGGGATTTGATCTCGTATTGGATACTTCTCTCGTTAATATACCTCTTTGAGTATGCATTTTCGAGGATTCTTCAATGGTTCCAGTTTTGGCCTTACATTAAGCTTATGATCATCTTCTGCCTTGTCACGCCAGACTTTGGACGAGCTTCTTATGCCTATAATAACCTTATCCGCACTTGCATCTCCTTAAATCCACAAGCAATCATATGTAGGTTAAATAACTGGAGGAAGTTTTTTGTCAAGAAAGATGACTTTTTACTGCATGTAGAGAGATATCTAAACGAGAATGGAACTGAAGCCTTAGAGAAACTCATTGCTAGCAAGAACACCAACCTATTGAAGAACACAACTTATAAACCTGATGCAGAAGCAACAAATGCAATTATAGCAACTGATAATAATGAAACGCAACAGACAAATGAGACAAAACTCCAAACACAGCAAAAAACCATCAAAGATTTGGAGGTGATTGAGAAAAAAGAAATTCTTGCAGGCAAGCAAGATATTTCTGTTGTGCCTAACCTTGTGCCAAGTCAGAATGCTTCACCAGCCATGGTGGAAACTAAAATATTAGTGGGGAAAGACACAGCTAGTGGAGAGCTTCCCGAGAGTTCTACACATAAGGAAGTGCAGAAAGAGTGGACATGCGCTTTATGTCATGTAACGACATCTAGCGAGAAAACCTTGATTGACCACCTTCATGGGAGGAAACACAAGGCAACTTGTGAATCTCTGAAAGCACAAAATCAACCTGTGCCACATAAGGTGAAAAGTGATCAGTCCAAAGATGATTTGAAGCAAAAGAACGTTATCTATCAGATAAATTCCAAGACCAAGAGTGGAGAGAAGGTAGGAAAAGAAGCCATGGACCATAAGGTGCAGAAACTGCAAAAGAAACTATATGAACCTGCTGGGACGAGTAATTCCAAATTTCTGTGTGAAGTCTGTAATGTCTATTGCCCTTGCGAGATTGCTTTGGCCTCACACAAAAATGGGAAGAAGCATTTGGCTAAAATTAAAACTTCAATCTGA
>Glyma.08g066700.1.p sequence-type=predicted peptide transcript=Glyma.08g066700.1 locus=Glyma.08g066700 ID=Glyma.08g066700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSSLWFLKLSLKCLDHLAWPLLALGYPLCASVQAIETDSNKETRDLISYWILLSLIYLFEYAFSRILQWFQFWPYIKLMIIFCLVTPDFGRASYAYNNLIRTCISLNPQAIICRLNNWRKFFVKKDDFLLHVERYLNENGTEALEKLIASKNTNLLKNTTYKPDAEATNAIIATDNNETQQTNETKLQTQQKTIKDLEVIEKKEILAGKQDISVVPNLVPSQNASPAMVETKILVGKDTASGELPESSTHKEVQKEWTCALCHVTTSSEKTLIDHLHGRKHKATCESLKAQNQPVPHKVKSDQSKDDLKQKNVIYQINSKTKSGEKVGKEAMDHKVQKLQKKLYEPAGTSNSKFLCEVCNVYCPCEIALASHKNGKKHLAKIKTSI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
