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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G09660.1 | AT | peroxisomal NAD-malate dehydrogenase 2 | JGI | N/A | IEA |
| GO:0005975 | GO-bp | carbohydrate metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006099 | GO-bp | tricarboxylic acid cycle | EnsemblGenomes | N/A | IEA |
| GO:0006108 | GO-bp | malate metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006694 | GO-bp | steroid biosynthetic process | JGI | N/A | IEA |
| GO:0019752 | GO-bp | carboxylic acid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0003854 | GO-mf | 3-beta-hydroxy-delta5-steroid dehydrogenase activity | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| GO:0016615 | GO-mf | malate dehydrogenase activity | EnsemblGenomes | N/A | IEA |
| GO:0016616 | GO-mf | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | EnsemblGenomes | N/A | IEA |
| GO:0016616 | GO-mf | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | JGI | N/A | IEA |
| GO:0030060 | GO-mf | L-malate dehydrogenase activity | EnsemblGenomes | N/A | IEA |
| KOG1494 | KOG | NAD-dependent malate dehydrogenase | JGI | N/A | IEA |
| PTHR11540 | Panther | MALATE AND LACTATE DEHYDROGENASE | JGI | N/A | IEA |
| PTHR11540:SF1 | Panther | JGI | N/A | IEA | |
| PF00056 | PFAM | lactate/malate dehydrogenase, NAD binding domain | JGI | N/A | IEA |
| PF02866 | PFAM | lactate/malate dehydrogenase, alpha/beta C-terminal domain | JGI | N/A | IEA |
| GLUCONEO-PWY | SoyCyc9 | gluconeogenesis I | Plant Metabolic Network | ISS | |
| GLYOXYLATE-BYPASS | SoyCyc9 | glyoxylate cycle | Plant Metabolic Network | ISS | |
| MALATE-ASPARTATE-SHUTTLE-PWY | SoyCyc9 | L-aspartate degradation II | Plant Metabolic Network | ISS | |
| PWY-5464 | SoyCyc9 | superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle | Plant Metabolic Network | ISS | |
| PWY-561 | SoyCyc9 | superpathway of glyoxylate cycle and fatty acid degradation | Plant Metabolic Network | ISS | |
| PWY-5690 | SoyCyc9 | TCA cycle II (plants and fungi) | Plant Metabolic Network | ISS | |
| GN7V-51674 | SoyCyc9-rxn | Enzyme name not determined | Plant Metabolic Network | ISS |
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Glyma.08g063800 not represented in the dataset |
Glyma.08g063800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.07g185400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g06820 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g063800.2 sequence-type=transcript locus=Glyma.08g063800 ID=Glyma.08g063800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 TTTACTTCAGTTTTTACACACTTTTAGTTCAGACTTCAAAGAGTTGTTTATATTTAAGTAAAGAACAACTTGGTATGTGTTagggagatataaagttgattgggtggttaagaaagaagaggaaaaagtttgcgggttccatcccctgctaacaatttacatttgccgattaaaaaaaacTTGGAAGGGAGTGATGTTCTTCTTAAGAGAGGTGAGTGCAGAGCAAAAGGTGGGGCACCTGGATTCAAAGTTGCAATTTTGGGGGCTGCTGGAGGAATTGGTCAATCCCTTTCTTTGCTGATGAAGATGAACCCATTGGTTTCAGTTCTTCATCTTTATGATGTTGTCAACACCCCTGGTGTCACAGCTGATGTTAGCCACATGGACACTGGTGCTGTGGTTCGTGGCTTTCTGGGGCAGCAACAACTTGAGAGTGCACTCACTGGCATGGACTTGGTAATCATACCTGCTGGGGTGCCAAGGAAACCTGGGATGACAAGAGATGATTTATTTAAAATAAATGCTGGAATTGTGAGGACCCTTTCTGAAGGAATTGCCAAGTGCTGCCCCAATGCAATTGTCAACTTGATTAGTAATCCAGTGAATTCCACAGTTGCTATTGCTGCGGAGGTTTTCAAGAAAGCCGGTACATATGATCCAAAGCGACTACTGGGTGTTACAACCCTTGATGTTGTGAGGGCAAATACTTTTGTGGCAGAGATACTTGGAGTTGATCCAAGAGAGGTTGATGTTCCAGTGGTTGGAGGTCATGCTGGAGTCACAATTTTGCCTCTTTTGTCACAGGTTAAGCCTCCCAGTAGCTTCACTGCAGAAGAAACTGAATACCTGACAAATCGCATCCAAAATGGTGGAACTGAAGTTGTTGAGGCAAAAGCTGGGGCTGGTTCTGCAACACTGTCAATGGCATATGCAGCTGCCAAGTTTGCTGGTGCATGCCTCCGTGGCTTAAAAGGAGAAGCTGGGGTAGTGGAGTGTGCTTTTGTTGATTCTCAGGTTACAGAACTTCCCTTCTTTGCAACCAAAGTGCGTCTAGGTCGTGCTGGAGCAGAAGAAGTTTATCAACTGGGTCCCCTGAATGAGTATGAAAGGATTGGATTGGAAAAAGCAAAGAGAGAGTTAGCAGGAAGCATCCAGAAGGGTGTAGAGTTCATCAGAAAATAAATGTGATAAGGAAAAACTAGTTTTTGTCTCTTATATTTAAGGACCATGTGTAATACTTCTCTTTGTTCATAGATTTTTTTCTTCTTCTTAAGAATAGTACTCTAAATTTTTGGTGTCATCCGTAATTGCTGATGATAACGGATTTGACATCAATAATCTCAGAAAGATACTAAAATATCAGCCTTTTGTACTAATTCCAGATCTTATTTTCTTTAATCTTTAACATATTCATAACACATTTGGCAGTGCAAAAGAAATAGTAATGGCTCTTTTGTCCCTTTAGA
>Glyma.08g063800.1 sequence-type=CDS polypeptide=Glyma.08g063800.1.p locus=Glyma.08g063800 ID=Glyma.08g063800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAAGCACGTGCAGGAGCCAATCAACGTATTGCAAGAATCTCTGCTCATCTTCAGCCTTCAAATTTCCAGGAAGGGAGTGATGTTCTTCTTAAGAGAGGTGAGTGCAGAGCAAAAGGTGGGGCACCTGGATTCAAAGTTGCAATTTTGGGGGCTGCTGGAGGAATTGGTCAATCCCTTTCTTTGCTGATGAAGATGAACCCATTGGTTTCAGTTCTTCATCTTTATGATGTTGTCAACACCCCTGGTGTCACAGCTGATGTTAGCCACATGGACACTGGTGCTGTGGTTCGTGGCTTTCTGGGGCAGCAACAACTTGAGAGTGCACTCACTGGCATGGACTTGGTAATCATACCTGCTGGGGTGCCAAGGAAACCTGGGATGACAAGAGATGATTTATTTAAAATAAATGCTGGAATTGTGAGGACCCTTTCTGAAGGAATTGCCAAGTGCTGCCCCAATGCAATTGTCAACTTGATTAGTAATCCAGTGAATTCCACAGTTGCTATTGCTGCGGAGGTTTTCAAGAAAGCCGGTACATATGATCCAAAGCGACTACTGGGTGTTACAACCCTTGATGTTGTGAGGGCAAATACTTTTGTGGCAGAGATACTTGGAGTTGATCCAAGAGAGGTTGATGTTCCAGTGGTTGGAGGTCATGCTGGAGTCACAATTTTGCCTCTTTTGTCACAGGTTAAGCCTCCCAGTAGCTTCACTGCAGAAGAAACTGAATACCTGACAAATCGCATCCAAAATGGTGGAACTGAAGTTGTTGAGGCAAAAGCTGGGGCTGGTTCTGCAACACTGTCAATGGCATATGCAGCTGCCAAGTTTGCTGGTGCATGCCTCCGTGGCTTAAAAGGAGAAGCTGGGGTAGTGGAGTGTGCTTTTGTTGATTCTCAGGTTACAGAACTTCCCTTCTTTGCAACCAAAGTGCGTCTAGGTCGTGCTGGAGCAGAAGAAGTTTATCAACTGGGTCCCCTGAATGAGTATGAAAGGATTGGATTGGAAAAAGCAAAGAGAGAGTTAGCAGGAAGCATCCAGAAGGGTGTAGAGTTCATCAGAAAATAA >Glyma.08g063800.2 sequence-type=CDS polypeptide=Glyma.08g063800.2.p locus=Glyma.08g063800 ID=Glyma.08g063800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAAGATGAACCCATTGGTTTCAGTTCTTCATCTTTATGATGTTGTCAACACCCCTGGTGTCACAGCTGATGTTAGCCACATGGACACTGGTGCTGTGGTTCGTGGCTTTCTGGGGCAGCAACAACTTGAGAGTGCACTCACTGGCATGGACTTGGTAATCATACCTGCTGGGGTGCCAAGGAAACCTGGGATGACAAGAGATGATTTATTTAAAATAAATGCTGGAATTGTGAGGACCCTTTCTGAAGGAATTGCCAAGTGCTGCCCCAATGCAATTGTCAACTTGATTAGTAATCCAGTGAATTCCACAGTTGCTATTGCTGCGGAGGTTTTCAAGAAAGCCGGTACATATGATCCAAAGCGACTACTGGGTGTTACAACCCTTGATGTTGTGAGGGCAAATACTTTTGTGGCAGAGATACTTGGAGTTGATCCAAGAGAGGTTGATGTTCCAGTGGTTGGAGGTCATGCTGGAGTCACAATTTTGCCTCTTTTGTCACAGGTTAAGCCTCCCAGTAGCTTCACTGCAGAAGAAACTGAATACCTGACAAATCGCATCCAAAATGGTGGAACTGAAGTTGTTGAGGCAAAAGCTGGGGCTGGTTCTGCAACACTGTCAATGGCATATGCAGCTGCCAAGTTTGCTGGTGCATGCCTCCGTGGCTTAAAAGGAGAAGCTGGGGTAGTGGAGTGTGCTTTTGTTGATTCTCAGGTTACAGAACTTCCCTTCTTTGCAACCAAAGTGCGTCTAGGTCGTGCTGGAGCAGAAGAAGTTTATCAACTGGGTCCCCTGAATGAGTATGAAAGGATTGGATTGGAAAAAGCAAAGAGAGAGTTAGCAGGAAGCATCCAGAAGGGTGTAGAGTTCATCAGAAAATAA
>Glyma.08g063800.1.p sequence-type=predicted peptide transcript=Glyma.08g063800.1 locus=Glyma.08g063800 ID=Glyma.08g063800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEARAGANQRIARISAHLQPSNFQEGSDVLLKRGECRAKGGAPGFKVAILGAAGGIGQSLSLLMKMNPLVSVLHLYDVVNTPGVTADVSHMDTGAVVRGFLGQQQLESALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVRTLSEGIAKCCPNAIVNLISNPVNSTVAIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEILGVDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTAEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFAGACLRGLKGEAGVVECAFVDSQVTELPFFATKVRLGRAGAEEVYQLGPLNEYERIGLEKAKRELAGSIQKGVEFIRK* >Glyma.08g063800.2.p sequence-type=predicted peptide transcript=Glyma.08g063800.2 locus=Glyma.08g063800 ID=Glyma.08g063800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MKMNPLVSVLHLYDVVNTPGVTADVSHMDTGAVVRGFLGQQQLESALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVRTLSEGIAKCCPNAIVNLISNPVNSTVAIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEILGVDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTAEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFAGACLRGLKGEAGVVECAFVDSQVTELPFFATKVRLGRAGAEEVYQLGPLNEYERIGLEKAKRELAGSIQKGVEFIRK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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