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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G10070.1 | AT | branched-chain amino acid transaminase 2 | JGI | N/A | IEA |
| AT1G50090.1 | AT | D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0009081 | GO-bp | branched-chain amino acid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| GO:0004084 | GO-mf | branched-chain-amino-acid transaminase activity | EnsemblGenomes | N/A | IEA |
| KOG0975 | KOG | Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily | JGI | N/A | IEA |
| PTHR11825 | Panther | SUBGROUP IIII AMINOTRANSFERASE | JGI | N/A | IEA |
| PTHR11825:SF2 | Panther | BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE, MITOCHONDRIAL | JGI | N/A | IEA |
| PF01063 | PFAM | Aminotransferase class IV | JGI | N/A | IEA |
| BRANCHED-CHAIN-AA-SYN-PWY | SoyCyc9 | superpathway of branched chain amino acid biosynthesis | Plant Metabolic Network | ISS | |
| LEU-DEG2-PWY | SoyCyc9 | L-leucine degradation I | Plant Metabolic Network | ISS | |
| LEUSYN-PWY | SoyCyc9 | L-leucine biosynthesis | Plant Metabolic Network | ISS | |
| PWY-4361 | SoyCyc9 | S-methyl-5-thio-α-D-ribose 1-phosphate degradation | Plant Metabolic Network | ISS | |
| PWY-7270 | SoyCyc9 | L-methionine salvage cycle II (plants) | Plant Metabolic Network | ISS | |
| PWY-7528 | SoyCyc9 | L-methionine salvage cycle I (bacteria and plants) | Plant Metabolic Network | ISS | |
| GN7V-49177 | SoyCyc9-rxn | leucine transaminase | Plant Metabolic Network | ISS |
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Glyma.08g063200 not represented in the dataset |
Glyma.08g063200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.07g186000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g06766 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g063200.2 sequence-type=transcript locus=Glyma.08g063200 ID=Glyma.08g063200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCTCCCCCTTCTATTTTAGGCAACTGCAAGACGGTTCTGAAATGTAATACTGCTGGGGAAAACTATGCTGACATTAATTGGGATGAGCTTGGATTTAGTCTAGTTCCAACAGATTACATGTATGTCATGAAATGTGCAAAGGGAGATAAGTTTTCACAAGGATCCATCCTTCCCTATGGAAACTTAGAGATTAACCCTTCTGCTGGAATCTTAAATTATGGGCAGGGAATCTTTGAGGGGCTAAAGGCACATAGAACTGAGGATGGGTGCATACTTCTATTTCGACCAGATGAGAATGCTCAACGCATGAAGAGAAGTGCAGATAGATTGTGTATGCCATCTCCATCTAATGACCAATTTGTTAATGCTGTAAAGCAGATAGTTCTTGCAAATAAACGCTGGGTGCCTCCTTCAGGAAAAGGGTCCCTATATATTAGGCCATTGCTCATGGGAACTGGAGCATTGTTAGGTTTGGCACCAGCACCAGACTATACATTTCTTATTTATTGTTCTCCAATTGGCAGCTACCACAAGgataaaaaaaGACTAATTTCATCTTTGTTAATTATTACAGGTGCACTAAACTTGAAAGTTGAGGATAAACTATATAAAGCAATATCTGGCAGTGGAGGAACCGGAGGAATCAAAAGTGTCACCAATTATGCCCCTGTTTATACTGCAATAACTGATGCAAAGGCCAACGGATTCTCCGATGTGTTGTTCTTGGACTCAGCAACTGGAAAATATATAGAGGAGGCCTCAGCATGCAATGTATTTGTTGTGAAGGTATACCCCGACTATTAAATCTGTATGTCTAAACTCTAAACCATGTGGAAATTTTATTATGTATGAACAAAATTTATTTAATTAAGTTATTCCTATATATGAAGGGCAACGCTAGCTTCACTCCTGCAATAGATGGAACCATCCTTCCAGGAATCATGGGAAAATCCATCATTGAGATTGCCATTGACTTGGGTTATCGGGTTTTTAATTTTCCTTCAATTATCGGCATGTAAATTGATTAATCTTGATGGTTTCATTTTCTACAAATTTTTGGTTTTCCAAACTATTCCCTATCACAATGTTATAACCATAAGTCACGGTTACTTGAATTATGTTCAGGTATTGGAACGTGCTGTATCAGTGGAGGAAATGCTGGGTGCTGATGAAATGTTCTGCACAGGAACTGCAATGGTTGTCAACTCTATTGCATCTGTAACCTATAAGAAAACAAGAATGGATTACAAAACAGGACCAGAAGCATTGTCTGCAAAACTACGCACAACACTTGTTGGAATTCAAACAGGGTGCGTTGAGGACAAAAAGTCATGGACAGTCCTAGTAGATTGAGCAATGAGCAATGCTTGTTAAATGATAGATGATTGTTTATTTTTCCTAATCAATAAGTTCTTATT
>Glyma.08g063200.1 sequence-type=CDS polypeptide=Glyma.08g063200.1.p locus=Glyma.08g063200 ID=Glyma.08g063200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCTCCCCCTTCTATTTTAGGCAACTGCAAGACGGTTCTGAAATGTAATACTGCTGGGGAAAACTATGCTGACATTAATTGGGATGAGCTTGGATTTAGTCTAGTTCCAACAGATTACATGTATGTCATGAAATGTGCAAAGGGAGATAAGTTTTCACAAGGATCCATCCTTCCCTATGGAAACTTAGAGATTAACCCTTCTGCTGGAATCTTAAATTATGGGCAGGGAATCTTTGAGGGGCTAAAGGCACATAGAACTGAGGATGGGTGCATACTTCTATTTCGACCAGATGAGAATGCTCAACGCATGAAGAGAAGTGCAGATAGATTGTGTATGCCATCTCCATCTAATGACCAATTTGTTAATGCTGTAAAGCAGATAGTTCTTGCAAATAAACGCTGGGTGCCTCCTTCAGGAAAAGGGTCCCTATATATTAGGCCATTGCTCATGGGAACTGGAGCATTGTTAGGTTTGGCACCAGCACCAGACTATACATTTCTTATTTATTGTTCTCCAATTGGCAGCTACCACAAGGATAAAAAAAGACTAATTTCATCTTTGTTAATTATTACAGGTGCACTAAACTTGAAAGTTGAGGATAAACTATATAAAGCAATATCTGGCAGTGGAGGAACCGGAGGAATCAAAAGTGTCACCAATTATGCCCCTGTTTATACTGCAATAACTGATGCAAAGGCCAACGGATTCTCCGATGTGTTGTTCTTGGACTCAGCAACTGGAAAATATATAGAGGAGGCCTCAGCATGCAATGTATTTGTTGTGAAGGGCAACGCTAGCTTCACTCCTGCAATAGATGGAACCATCCTTCCAGGAATCATGGGAAAATCCATCATTGAGATTGCCATTGACTTGGGTTATCGGGTATTGGAACGTGCTGTATCAGTGGAGGAAATGCTGGGTGCTGATGAAATGTTCTGCACAGGAACTGCAATGGTTGTCAACTCTATTGCATCTGTAACCTATAAGAAAACAAGAATGGATTACAAAACAGGACCAGAAGCATTGTCTGCAAAACTACGCACAACACTTGTTGGAATTCAAACAGGGTGCGTTGAGGACAAAAAGTCATGGACAGTCCTAGTAGATTGA >Glyma.08g063200.2 sequence-type=CDS polypeptide=Glyma.08g063200.2.p locus=Glyma.08g063200 ID=Glyma.08g063200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCTCCCCCTTCTATTTTAGGCAACTGCAAGACGGTTCTGAAATGTAATACTGCTGGGGAAAACTATGCTGACATTAATTGGGATGAGCTTGGATTTAGTCTAGTTCCAACAGATTACATGTATGTCATGAAATGTGCAAAGGGAGATAAGTTTTCACAAGGATCCATCCTTCCCTATGGAAACTTAGAGATTAACCCTTCTGCTGGAATCTTAAATTATGGGCAGGGAATCTTTGAGGGGCTAAAGGCACATAGAACTGAGGATGGGTGCATACTTCTATTTCGACCAGATGAGAATGCTCAACGCATGAAGAGAAGTGCAGATAGATTGTGTATGCCATCTCCATCTAATGACCAATTTGTTAATGCTGTAAAGCAGATAGTTCTTGCAAATAAACGCTGGGTGCCTCCTTCAGGAAAAGGGTCCCTATATATTAGGCCATTGCTCATGGGAACTGGAGCATTGTTAGGTTTGGCACCAGCACCAGACTATACATTTCTTATTTATTGTTCTCCAATTGGCAGCTACCACAAGGATAAAAAAAGACTAATTTCATCTTTGTTAATTATTACAGGTGCACTAAACTTGAAAGTTGAGGATAAACTATATAAAGCAATATCTGGCAGTGGAGGAACCGGAGGAATCAAAAGTGTCACCAATTATGCCCCTGTTTATACTGCAATAACTGATGCAAAGGCCAACGGATTCTCCGATGTGTTGTTCTTGGACTCAGCAACTGGAAAATATATAGAGGAGGCCTCAGCATGCAATGTATTTGTTGTGAAGGTATACCCCGACTATTAA
>Glyma.08g063200.1.p sequence-type=predicted peptide transcript=Glyma.08g063200.1 locus=Glyma.08g063200 ID=Glyma.08g063200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSPPSILGNCKTVLKCNTAGENYADINWDELGFSLVPTDYMYVMKCAKGDKFSQGSILPYGNLEINPSAGILNYGQGIFEGLKAHRTEDGCILLFRPDENAQRMKRSADRLCMPSPSNDQFVNAVKQIVLANKRWVPPSGKGSLYIRPLLMGTGALLGLAPAPDYTFLIYCSPIGSYHKDKKRLISSLLIITGALNLKVEDKLYKAISGSGGTGGIKSVTNYAPVYTAITDAKANGFSDVLFLDSATGKYIEEASACNVFVVKGNASFTPAIDGTILPGIMGKSIIEIAIDLGYRVLERAVSVEEMLGADEMFCTGTAMVVNSIASVTYKKTRMDYKTGPEALSAKLRTTLVGIQTGCVEDKKSWTVLVD* >Glyma.08g063200.2.p sequence-type=predicted peptide transcript=Glyma.08g063200.2 locus=Glyma.08g063200 ID=Glyma.08g063200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSPPSILGNCKTVLKCNTAGENYADINWDELGFSLVPTDYMYVMKCAKGDKFSQGSILPYGNLEINPSAGILNYGQGIFEGLKAHRTEDGCILLFRPDENAQRMKRSADRLCMPSPSNDQFVNAVKQIVLANKRWVPPSGKGSLYIRPLLMGTGALLGLAPAPDYTFLIYCSPIGSYHKDKKRLISSLLIITGALNLKVEDKLYKAISGSGGTGGIKSVTNYAPVYTAITDAKANGFSDVLFLDSATGKYIEEASACNVFVVKVYPDY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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