SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.08g062000

Feature Type:gene_model
Chromosome:Gm08
Start:4783724
stop:4786913
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g062000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G61720.1AT NAD(P)-binding Rossmann-fold superfamily protein JGI N/AIEA
GO:0006694GO-bp steroid biosynthetic process JGI N/AIEA
GO:0044237GO-bp cellular metabolic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0003854GO-mf 3-beta-hydroxy-delta5-steroid dehydrogenase activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016616GO-mf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor JGI N/AIEA
GO:0033729GO-mf anthocyanidin reductase activity EnsemblGenomesN/AIEA
GO:0050662GO-mf coenzyme binding EnsemblGenomesN/AIEA
GO:0050662GO-mf coenzyme binding JGI N/AIEA
KOG1502 KOG Flavonol reductase/cinnamoyl-CoA reductase JGI N/AIEA
PTHR10366Panther NAD DEPENDENT EPIMERASE/DEHYDRATASE JGI N/AIEA
PTHR10366:SF9Panther JGI N/AIEA
PF01370PFAM NAD dependent epimerase/dehydratase family JGI N/AIEA
PWY-641SoyCyc9 proanthocyanidins biosynthesis from flavanols Plant Metabolic Network ISS
GN7V-50695SoyCyc9-rxn anthocyanidin reductase Plant Metabolic Network ISS

Expression Patterns of Glyma.08g062000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g062000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g06630 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g062000
>Glyma.08g062000.2 sequence-type=transcript locus=Glyma.08g062000 ID=Glyma.08g062000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATATAATTTTATCATGACCAAAAGTACTTAATTACATTGGTGTTTTGTGCAGATAATACTAAAAAAATACCTCACCTTTTGGCACTGCAAAGTTTGGGCGAATTGAACATATTTGGAGCAGATTTAACTGGTGAAAAAGATTTTGATGCTCCTATAGCAGGCTGTGAACTTGTCTTCCAGCTTGCTACACCTGTGAACTTTGCTTCTGAAGATCCTGAGAATGACATGATCAAGCCTGCAATCACAGGCGTCTTGAATGTGTTAAAAGCATGTGTGCGAGCAAAAGGAGTCAAACGAGTCATCTTGACATCTTCAGCAGCTGCTGTGACCATAAACCAACTCAAGGGAACTGATCTGGTTATGGATGAAAGCAACTGGACTGATGTTGAGTACTTGAGCACTGCAAAGCCACCCACTTGGGGTTATCCTGCCTCCAAAGCACTAGCAGAGAAGGCAGCATGGAAATTTGCTGAAGAAAATCACATTGATCTCATCACTGTGATACCTACTCTCACAACTGGTCCTTCTGTCACTACAGACATCCCATCAAGTGTTGGCATGGCAGGGTCCCTCATAACAGGCAATGATTTCCTCATAAACGCTCTGAAAGGTATGCAGTTGCTATCAGGTTCAATATCCATCACTCATGTGGAGGATATTTGCCGAGCACAAATATTTGTGGCGGAGAAAGAATCGGCTTCTGGTCGATACATTTGCTGTGCTCACAATACTAGTGTTCCTGAGCTTGCAAAGTTTCTCAGCAAACGATACCCTCAATATAAAATTCCAACTGAATTCGATGATTGTCCCTCAAAGGCAAAGTTAATAATCTCTTCCGAAAAGCTTGTCAAAGAAGGATTCAGTTTCAAGTATGGAATTGAAGAAATTTATGATCAGACTCTGGAGTACTTAAAGAGCAAAGGGGCTCTGAATAACTGAATTTTGAAAATTCTAATGCTCTAGCAAACTCTCCACTTGTTATGTAGTAGCATCTTGCGAATAATTAATCAAGGGGAATAGCAACCATCTCTGTTAATCCACTACTTTATTACCACCTCCTTAAATTACTGATTATGATATTCCCCACTTTGTTAAAAAGAGAGCTCAGTCGCTTTATTAAGTTTGGATTTGATTATGCTTGTTGTTCAAATTTTCACGTTTTTATCACAAATGATTATACATACTTTATCAATGTTCACAA

>Glyma.08g062000.3 sequence-type=transcript locus=Glyma.08g062000 ID=Glyma.08g062000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATCGAATGCTTTTGCGTGTACGTGTGTGCATGTGTATGTTGAAGAAAAAGACTAATGAGGAAATTCTTTTGCAATTACACTATTCAGAATGACATGATCAAGCCTGCAATCACAGGCGTCTTGAATGTGTTAAAAGCATGTGTGCGAGCAAAAGGAGTCAAACGAGTCATCTTGACATCTTCAGCAGCTGCTGTGACCATAAACCAACTCAAGGGAACTGATCTGGTTATGGATGAAAGCAACTGGACTGATGTTGAGTACTTGAGCACTGCAAAGCCACCCACTTGGGGTTATCCTGCCTCCAAAGCACTAGCAGAGAAGGCAGCATGGAAATTTGCTGAAGAAAATCACATTGATCTCATCACTGTGATACCTACTCTCACAACTGGTCCTTCTGTCACTACAGACATCCCATCAAGTGTTGGCATGGCAGGGTCCCTCATAACAGGCAATGATTTCCTCATAAACGCTCTGAAAGGTATGCAGTTGCTATCAGGTTCAATATCCATCACTCATGTGGAGGATATTTGCCGAGCACAAATATTTGTGGCGGAGAAAGAATCGGCTTCTGGTCGATACATTTGCTGTGCTCACAATACTAGTGTTCCTGAGCTTGCAAAGTTTCTCAGCAAACGATACCCTCAATATAAAATTCCAACTGAATTCGATGATTGTCCCTCAAAGGCAAAGTTAATAATCTCTTCCGAAAAGCTTGTCAAAGAAGGATTCAGTTTCAAGTATGGAATTGAAGAAATTTATGATCAGACTCTGGAGTACTTAAAGAGCAAAGGGGCTCTGAATAACTGAATTTTGAAAATTCTAATGCTCTAGCAAACTCTCCACTTGTTATGTAGTAGCATCTTGCGAATAATTAATCAAGGGGAATAGCAACCATCTCTGTTAATCCACTACTTTATTACCACCTCCTTAAATTACTGATTATGATATTCCCCACTTTGTTAAAAAGAGAGCTCAGTCGCTTTATTAAGTTTGGATTTGATTATGCTTGTTGTTCAAATTTTCACGTTTTTATCACAAATGATTATACATACTTTATCAATGTTCACAA
Coding sequences of Glyma.08g062000
>Glyma.08g062000.1 sequence-type=CDS polypeptide=Glyma.08g062000.1.p locus=Glyma.08g062000 ID=Glyma.08g062000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCACTATCAAGCCAACTGGAAAGAAGGCATGTGTGATTGGAGGGAGTGGATTTATGGCCTCTTTGTTGATCAAGCAGTTGCTTGAAAAGGGTTATGCTGTCAATACCACAGTTAGAGACCCAGATAATACTAAAAAAATACCTCACCTTTTGGCACTGCAAAGTTTGGGCGAATTGAACATATTTGGAGCAGATTTAACTGGTGAAAAAGATTTTGATGCTCCTATAGCAGGCTGTGAACTTGTCTTCCAGCTTGCTACACCTGTGAACTTTGCTTCTGAAGATCCTGAGAATGACATGATCAAGCCTGCAATCACAGGCGTCTTGAATGTGTTAAAAGCATGTGTGCGAGCAAAAGGAGTCAAACGAGTCATCTTGACATCTTCAGCAGCTGCTGTGACCATAAACCAACTCAAGGGAACTGATCTGGTTATGGATGAAAGCAACTGGACTGATGTTGAGTACTTGAGCACTGCAAAGCCACCCACTTGGGGTTATCCTGCCTCCAAAGCACTAGCAGAGAAGGCAGCATGGAAATTTGCTGAAGAAAATCACATTGATCTCATCACTGTGATACCTACTCTCACAACTGGTCCTTCTGTCACTACAGACATCCCATCAAGTGTTGGCATGGCAGGGTCCCTCATAACAGGCAATGATTTCCTCATAAACGCTCTGAAAGGTATGCAGTTGCTATCAGGTTCAATATCCATCACTCATGTGGAGGATATTTGCCGAGCACAAATATTTGTGGCGGAGAAAGAATCGGCTTCTGGTCGATACATTTGCTGTGCTCACAATACTAGTGTTCCTGAGCTTGCAAAGTTTCTCAGCAAACGATACCCTCAATATAAAATTCCAACTGAATTCGATGATTGTCCCTCAAAGGCAAAGTTAATAATCTCTTCCGAAAAGCTTGTCAAAGAAGGATTCAGTTTCAAGTATGGAATTGAAGAAATTTATGATCAGACTCTGGAGTACTTAAAGAGCAAAGGGGCTCTGAATAACTGA

>Glyma.08g062000.2 sequence-type=CDS polypeptide=Glyma.08g062000.2.p locus=Glyma.08g062000 ID=Glyma.08g062000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATCAAGCCTGCAATCACAGGCGTCTTGAATGTGTTAAAAGCATGTGTGCGAGCAAAAGGAGTCAAACGAGTCATCTTGACATCTTCAGCAGCTGCTGTGACCATAAACCAACTCAAGGGAACTGATCTGGTTATGGATGAAAGCAACTGGACTGATGTTGAGTACTTGAGCACTGCAAAGCCACCCACTTGGGGTTATCCTGCCTCCAAAGCACTAGCAGAGAAGGCAGCATGGAAATTTGCTGAAGAAAATCACATTGATCTCATCACTGTGATACCTACTCTCACAACTGGTCCTTCTGTCACTACAGACATCCCATCAAGTGTTGGCATGGCAGGGTCCCTCATAACAGGCAATGATTTCCTCATAAACGCTCTGAAAGGTATGCAGTTGCTATCAGGTTCAATATCCATCACTCATGTGGAGGATATTTGCCGAGCACAAATATTTGTGGCGGAGAAAGAATCGGCTTCTGGTCGATACATTTGCTGTGCTCACAATACTAGTGTTCCTGAGCTTGCAAAGTTTCTCAGCAAACGATACCCTCAATATAAAATTCCAACTGAATTCGATGATTGTCCCTCAAAGGCAAAGTTAATAATCTCTTCCGAAAAGCTTGTCAAAGAAGGATTCAGTTTCAAGTATGGAATTGAAGAAATTTATGATCAGACTCTGGAGTACTTAAAGAGCAAAGGGGCTCTGAATAACTGA

>Glyma.08g062000.3 sequence-type=CDS polypeptide=Glyma.08g062000.3.p locus=Glyma.08g062000 ID=Glyma.08g062000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGGAAATTCTTTTGCAATTACACTATTCAGAATGACATGATCAAGCCTGCAATCACAGGCGTCTTGAATGTGTTAAAAGCATGTGTGCGAGCAAAAGGAGTCAAACGAGTCATCTTGACATCTTCAGCAGCTGCTGTGACCATAAACCAACTCAAGGGAACTGATCTGGTTATGGATGAAAGCAACTGGACTGATGTTGAGTACTTGAGCACTGCAAAGCCACCCACTTGGGGTTATCCTGCCTCCAAAGCACTAGCAGAGAAGGCAGCATGGAAATTTGCTGAAGAAAATCACATTGATCTCATCACTGTGATACCTACTCTCACAACTGGTCCTTCTGTCACTACAGACATCCCATCAAGTGTTGGCATGGCAGGGTCCCTCATAACAGGCAATGATTTCCTCATAAACGCTCTGAAAGGTATGCAGTTGCTATCAGGTTCAATATCCATCACTCATGTGGAGGATATTTGCCGAGCACAAATATTTGTGGCGGAGAAAGAATCGGCTTCTGGTCGATACATTTGCTGTGCTCACAATACTAGTGTTCCTGAGCTTGCAAAGTTTCTCAGCAAACGATACCCTCAATATAAAATTCCAACTGAATTCGATGATTGTCCCTCAAAGGCAAAGTTAATAATCTCTTCCGAAAAGCTTGTCAAAGAAGGATTCAGTTTCAAGTATGGAATTGAAGAAATTTATGATCAGACTCTGGAGTACTTAAAGAGCAAAGGGGCTCTGAATAACTGA
Predicted protein sequences of Glyma.08g062000
>Glyma.08g062000.1.p sequence-type=predicted peptide transcript=Glyma.08g062000.1 locus=Glyma.08g062000 ID=Glyma.08g062000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATIKPTGKKACVIGGSGFMASLLIKQLLEKGYAVNTTVRDPDNTKKIPHLLALQSLGELNIFGADLTGEKDFDAPIAGCELVFQLATPVNFASEDPENDMIKPAITGVLNVLKACVRAKGVKRVILTSSAAAVTINQLKGTDLVMDESNWTDVEYLSTAKPPTWGYPASKALAEKAAWKFAEENHIDLITVIPTLTTGPSVTTDIPSSVGMAGSLITGNDFLINALKGMQLLSGSISITHVEDICRAQIFVAEKESASGRYICCAHNTSVPELAKFLSKRYPQYKIPTEFDDCPSKAKLIISSEKLVKEGFSFKYGIEEIYDQTLEYLKSKGALNN*

>Glyma.08g062000.2.p sequence-type=predicted peptide transcript=Glyma.08g062000.2 locus=Glyma.08g062000 ID=Glyma.08g062000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIKPAITGVLNVLKACVRAKGVKRVILTSSAAAVTINQLKGTDLVMDESNWTDVEYLSTAKPPTWGYPASKALAEKAAWKFAEENHIDLITVIPTLTTGPSVTTDIPSSVGMAGSLITGNDFLINALKGMQLLSGSISITHVEDICRAQIFVAEKESASGRYICCAHNTSVPELAKFLSKRYPQYKIPTEFDDCPSKAKLIISSEKLVKEGFSFKYGIEEIYDQTLEYLKSKGALNN*

>Glyma.08g062000.3.p sequence-type=predicted peptide transcript=Glyma.08g062000.3 locus=Glyma.08g062000 ID=Glyma.08g062000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRKFFCNYTIQNDMIKPAITGVLNVLKACVRAKGVKRVILTSSAAAVTINQLKGTDLVMDESNWTDVEYLSTAKPPTWGYPASKALAEKAAWKFAEENHIDLITVIPTLTTGPSVTTDIPSSVGMAGSLITGNDFLINALKGMQLLSGSISITHVEDICRAQIFVAEKESASGRYICCAHNTSVPELAKFLSKRYPQYKIPTEFDDCPSKAKLIISSEKLVKEGFSFKYGIEEIYDQTLEYLKSKGALNN*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo