Glyma.08g061200

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Report for Sequence Feature Glyma.08g061200

Feature Type:	gene_model
Chromosome:	Gm08
Start:	4718616
stop:	4721895
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g061200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G27270.1	AT	Quinone reductase family protein	JGI	N/A	IEA
AT5G54500.1	AT	flavodoxin-like quinone reductase 1	JGI	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0005886	GO-cc	plasma membrane	EnsemblGenomes	N/A	IEA
GO:0003955	GO-mf	NAD(P)H dehydrogenase (quinone) activity	EnsemblGenomes	N/A	IEA
GO:0010181	GO-mf	FMN binding	EnsemblGenomes	N/A	IEA
GO:0010181	GO-mf	FMN binding	JGI	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	EnsemblGenomes	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	JGI	N/A	IEA
KOG3135	KOG	1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein	JGI	N/A	IEA
PF03358	PFAM	NADPH-dependent FMN reductase	JGI	N/A	IEA
GN7V-41275	SoyCyc9-rxn	NAD(P)H dehydrogenase (quinone)	Plant Metabolic Network		ISS

Expression Patterns of Glyma.08g061200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g061200 not represented in the dataset	Glyma.08g061200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.08g061200

Paralog	Evidence	Comments
Glyma.07g188200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g061200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g06570	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.08g061200

Limit To All Plant Sequences

>Glyma.08g061200.2 sequence-type=transcript locus=Glyma.08g061200 ID=Glyma.08g061200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGAGTAGGTGCTGAAAATAGAAAATTGGGAATTGGGTCTTTGTGTTTTAGTGTGCATTATGTGTCTTTCTTATTATTGCACGATTCTCCATTCAAGATAGTCAACTCTGCGTTTACTATTCTACGTACGGACATGTTGAGAAGTTAGCTGAAGAGATTAAAAAGGGAGCTGGTTCCGTTGAAGGTGTGGAAGCAAAGCTATGGCAGGTACCTGAAACACTTTCTGAAGAGGTCCTTGGGAAGATGGGTGCACCTCCAAAGAGTGATGTACCGATTATTACACCCAACGAGCTACCTGAGGCTGATGGCTTATTGCTTGGTTTCCCCACAAGATTTGGACTGATGGCTGCTCAATTCAAAGCTTTCATGGATGCAACTGGAGGCCTGTGGCGCACACAGGCACTAGCTGGAAAGCCTGCAGGAATCTTTTACAGCACTGGTTCTCAAGGAGGTGGACAAGAGACTACTCCGTTGACATCTATTACTCAGCTTGTTCACCATGGGATGATTTTTGTGCCCATTGGTTACACATTTGGTGCTGGGATGTTTGAGATGGAGAATGTGAAGGGTGGATCCCCTTATGGTGCAGGTACCTATGCCGGGGATGGTTCCAGACAACCAACTGAGTTAGAATTGGCTCAAGCTTTTCATCAAGGGAAGTACTTTGCTGGCATTGCTAAGAAGCTTAAGGGATCATCTCAGTGAGATCTCTATACATCTACCATTTCATGTTTCTATATACTTAAGCAAGCAAAAGAGTTATGTGCGTCATATGTCCAGTTTCCAGTTCATAATTTCCAACAGAATAAGATGTTAATTagagagagagaatgagagagagagagaaagTAATCAACACTTGGGTTCAATACTATTGTGTTGTCATTTGTCATAATGATGTATCCTCAAAATACAATGTTATTGTCAATAACAAGAATTTGTCAATTGTTACTATTTTCATTGAGATCAAAGTGTTTGTTAT

>Glyma.08g061200.3 sequence-type=transcript locus=Glyma.08g061200 ID=Glyma.08g061200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAGAATGAGTTACAAAATCACTTTTCTAGCCAAGTTATATATGCTCCACAATCCATTAGAACTTGGAACAATCTGGGAATTTTCAATATGTATTATTTATGATGTGCTTATTCATACAGGTACCTGAAACACTTTCTGAAGAGGTCCTTGGGAAGATGGGTGCACCTCCAAAGAGTGATGTACCGATTATTACACCCAACGAGCTACCTGAGGCTGATGGCTTATTGCTTGGTTTCCCCACAAGATTTGGACTGATGGCTGCTCAATTCAAAGCTTTCATGGATGCAACTGGAGGCCTGTGGCGCACACAGGCACTAGCTGGAAAGCCTGCAGGAATCTTTTACAGCACTGGTTCTCAAGGAGGTGGACAAGAGACTACTCCGTTGACATCTATTACTCAGCTTGTTCACCATGGGATGATTTTTGTGCCCATTGGTTACACATTTGGTGCTGGGATGTTTGAGATGGAGAATGTGAAGGGTGGATCCCCTTATGGTGCAGGTACCTATGCCGGGGATGGTTCCAGACAACCAACTGAGTTAGAATTGGCTCAAGCTTTTCATCAAGGGAAGTACTTTGCTGGCATTGCTAAGAAGCTTAAGGGATCATCTCAGTGAGATCTCTATACATCTACCATTTCATGTTTCTATATACTTAAGCAAGCAAAAGAGTTATGTGCGTCATATGTCCAGTTTCCAGTTCATAATTTCCAACAGAATAAGATGTTAATTagagagagagaatgagagagagagagaaagTAATCAACACTTGGGTTCAATACTATTGTGTTGTCATTTGTCATAATGATGTATCCTCAAAATACAATGTTATTGTCAATAACAAGAATTTGTCAATTGTTACTATTTTCATTGAGATCAAAGTGTTTGTTAT

Coding sequences of Glyma.08g061200

Limit To All Plant Sequences

>Glyma.08g061200.1 sequence-type=CDS polypeptide=Glyma.08g061200.1.p locus=Glyma.08g061200 ID=Glyma.08g061200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTACCACTAAAGTTTACATTGTTTACTATTCTACGTACGGACATGTTGAGAAGTTAGCTGAAGAGATTAAAAAGGGAGCTGGTTCCGTTGAAGGTGTGGAAGCAAAGCTATGGCAGGTACCTGAAACACTTTCTGAAGAGGTCCTTGGGAAGATGGGTGCACCTCCAAAGAGTGATGTACCGATTATTACACCCAACGAGCTACCTGAGGCTGATGGCTTATTGCTTGGTTTCCCCACAAGATTTGGACTGATGGCTGCTCAATTCAAAGCTTTCATGGATGCAACTGGAGGCCTGTGGCGCACACAGGCACTAGCTGGAAAGCCTGCAGGAATCTTTTACAGCACTGGTTCTCAAGGAGGTGGACAAGAGACTACTCCGTTGACATCTATTACTCAGCTTGTTCACCATGGGATGATTTTTGTGCCCATTGGTTACACATTTGGTGCTGGGATGTTTGAGATGGAGAATGTGAAGGGTGGATCCCCTTATGGTGCAGGTACCTATGCCGGGGATGGTTCCAGACAACCAACTGAGTTAGAATTGGCTCAAGCTTTTCATCAAGGGAAGTACTTTGCTGGCATTGCTAAGAAGCTTAAGGGATCATCTCAGTGA

>Glyma.08g061200.2 sequence-type=CDS polypeptide=Glyma.08g061200.2.p locus=Glyma.08g061200 ID=Glyma.08g061200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTGCACCTCCAAAGAGTGATGTACCGATTATTACACCCAACGAGCTACCTGAGGCTGATGGCTTATTGCTTGGTTTCCCCACAAGATTTGGACTGATGGCTGCTCAATTCAAAGCTTTCATGGATGCAACTGGAGGCCTGTGGCGCACACAGGCACTAGCTGGAAAGCCTGCAGGAATCTTTTACAGCACTGGTTCTCAAGGAGGTGGACAAGAGACTACTCCGTTGACATCTATTACTCAGCTTGTTCACCATGGGATGATTTTTGTGCCCATTGGTTACACATTTGGTGCTGGGATGTTTGAGATGGAGAATGTGAAGGGTGGATCCCCTTATGGTGCAGGTACCTATGCCGGGGATGGTTCCAGACAACCAACTGAGTTAGAATTGGCTCAAGCTTTTCATCAAGGGAAGTACTTTGCTGGCATTGCTAAGAAGCTTAAGGGATCATCTCAGTGA

>Glyma.08g061200.3 sequence-type=CDS polypeptide=Glyma.08g061200.3.p locus=Glyma.08g061200 ID=Glyma.08g061200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGTGCTTATTCATACAGGTACCTGAAACACTTTCTGAAGAGGTCCTTGGGAAGATGGGTGCACCTCCAAAGAGTGATGTACCGATTATTACACCCAACGAGCTACCTGAGGCTGATGGCTTATTGCTTGGTTTCCCCACAAGATTTGGACTGATGGCTGCTCAATTCAAAGCTTTCATGGATGCAACTGGAGGCCTGTGGCGCACACAGGCACTAGCTGGAAAGCCTGCAGGAATCTTTTACAGCACTGGTTCTCAAGGAGGTGGACAAGAGACTACTCCGTTGACATCTATTACTCAGCTTGTTCACCATGGGATGATTTTTGTGCCCATTGGTTACACATTTGGTGCTGGGATGTTTGAGATGGAGAATGTGAAGGGTGGATCCCCTTATGGTGCAGGTACCTATGCCGGGGATGGTTCCAGACAACCAACTGAGTTAGAATTGGCTCAAGCTTTTCATCAAGGGAAGTACTTTGCTGGCATTGCTAAGAAGCTTAAGGGATCATCTCAGTGA

Predicted protein sequences of Glyma.08g061200

Limit To All Plant Sequences

>Glyma.08g061200.1.p sequence-type=predicted peptide transcript=Glyma.08g061200.1 locus=Glyma.08g061200 ID=Glyma.08g061200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATTKVYIVYYSTYGHVEKLAEEIKKGAGSVEGVEAKLWQVPETLSEEVLGKMGAPPKSDVPIITPNELPEADGLLLGFPTRFGLMAAQFKAFMDATGGLWRTQALAGKPAGIFYSTGSQGGGQETTPLTSITQLVHHGMIFVPIGYTFGAGMFEMENVKGGSPYGAGTYAGDGSRQPTELELAQAFHQGKYFAGIAKKLKGSSQ*

>Glyma.08g061200.2.p sequence-type=predicted peptide transcript=Glyma.08g061200.2 locus=Glyma.08g061200 ID=Glyma.08g061200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGAPPKSDVPIITPNELPEADGLLLGFPTRFGLMAAQFKAFMDATGGLWRTQALAGKPAGIFYSTGSQGGGQETTPLTSITQLVHHGMIFVPIGYTFGAGMFEMENVKGGSPYGAGTYAGDGSRQPTELELAQAFHQGKYFAGIAKKLKGSSQ*

>Glyma.08g061200.3.p sequence-type=predicted peptide transcript=Glyma.08g061200.3 locus=Glyma.08g061200 ID=Glyma.08g061200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMCLFIQVPETLSEEVLGKMGAPPKSDVPIITPNELPEADGLLLGFPTRFGLMAAQFKAFMDATGGLWRTQALAGKPAGIFYSTGSQGGGQETTPLTSITQLVHHGMIFVPIGYTFGAGMFEMENVKGGSPYGAGTYAGDGSRQPTELELAQAFHQGKYFAGIAKKLKGSSQ*

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