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Report for Sequence Feature Glyma.08g055900

Feature Type:gene_model
Chromosome:Gm08
Start:4302730
stop:4306598
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g055900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G10170.1AT NF-X-like 1 JGI N/AIEA
GO:0000122GO-bp negative regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006366GO-bp transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0000977GO-mf RNA polymerase II regulatory region sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0001078GO-mf transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
KOG1952 KOG Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains JGI N/AIEA
PTHR12360Panther NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 (NFX1) JGI N/AIEA

Expression Patterns of Glyma.08g055900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g055900
ParalogEvidenceComments
Glyma.05g247600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g055900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g06040 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g055900
>Glyma.08g055900.1 sequence-type=CDS polypeptide=Glyma.08g055900.1.p locus=Glyma.08g055900 ID=Glyma.08g055900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTTCGAAAGAGCGAAGCCAGCAGCCGCATTCGAGGGTTCCTCGTCGTCAGGAGTGGATTCGTAGAGATGTTGGTGGTTGCTCCAATCCAAGAAAGCCCAAGAAGGGATCATCTTCGAATTCGAGGGAGGAGTCTAATTTGCCTCAGCTGCTGCAAGAGATTCAGGACAAGCTCGTCAAAGGAGCTGTCGAATGCATGATTTGTTATGACATGGTGCGCAGGTCTGCGCCTATCTGGTCTTGCTCCGGTTGCTTCTCTATCTTTCACCTCACTTGTATCAAGAAGTGGGCTCGTGCACCCATTTCTGTGGATTTGTCCGTTGAGAAGAACCAGGGCGGCTTCAATTGGCGTTGCCCTGGTTGCCAGTCTGTGCAGCTCACTTCATCCAAGGATATTAGGTATCTATGCTTCTGTGGAAAGAGGCCAGATCCACCCTCTGATTTGTATCTCATGCCACATTCCTGTGGAGAACCATGTGGCAAGCCTCTTGAGAGGGACCTTCAAGGGGATAAGGAGCTTCTTTGCCCTCATCTTTGTGTCTTGCAATGCCATCCCGGCCCCTGTCCTCCTTGCAAAGCATTTGCCCCTCCACGTCTGTGTCCTTGTGGGAAGAAAAATATTACCACTCGTTGCTCTGACCGCCAGTCTGTTCTTACCTGTGGCCAGCGCTGCCAAAAGCTTCTTCAATGTGGCCGTCATCGCTGTCAGCAAATCTGTCATCTGGGTCCTTGTCATCCTTGTCAAGTTCCAATCAATGCCTCTTGCTTTTGTGCCCAAAAGATGGAGGTAATTCTTTGTGGGGAGATGGCTGTCAAGGGTGAAATCAGAGCAGATGGTGGAGTATTCTCTTGTGGTTCCACTTGTCAAAAGAAACTTAATTGTGGTAATCATATCTGTATCGAGACTTGTCATCCAGGTAGCTGTGGGGACTGTGAATTATTACCATCCCGTATTAAGACATGCTGTTGTGGGAAAACTAGATTGGAGGAGAAACGCCACAGTTGTTTAGACCCAATTCCTACCTGTTCACAAGTATGTGGCAAGTACCTTCCTTGCGGGATTCATCATTGTGAAGAGCCATGCCATGCTGGGGATTGTTCTCCTTGTCTGGTTCTAGTTTCTCAGAAGTGTAGATGTGGCTCGACTTCCCGAACTGTGGAGTGTTGCAAGACAAAAATGGAAAATGAGAAATTTACTTGTGAAAGGCCTTGTGGGCAGAAAAAGAATTGTGGAAGGCATCGATGTAGTGAAAGGTGTTGTCCACTTTCTAATCCAAATAATATTCTAAATGCAGATTGGGATCCACACTTCTGTCAATTGCCGTGTGGAAAGAAGTTAAGGTGTGGGCAGCATGCATGTGAATCCCTGTGCCACAGTGGTCATTGTCCACCTTGTCTTGAAACTATATTTACTGATTTGACATGTGCTTGTGGTAAGACTTCAATCCCTCCTCCATTGCCTTGTGGCACACCGCCTCCCTCATGTCAGCTTCCATGTTCAGTTCCTCAGCCTTGTTCGCATCCAGCCTCTCACAGCTGTCATTTTGGAGATTGCCCTCCTTGTTCAATGCCCATAGCAAAAGAATGTATTGGTGGACATGTAGTTCTTAGGAACATACCTTGTGGTTCGAAGGATATTAAATGCAATAAACTCTGTGGGAAGACCAGACAGTGTGGTTTACATGCATGTGGCAGAACATGTCACCTCCCCCCTTGTGATAATCTGTCAGCTGTGCCAGGTATCCGAGCCTCTTGTGGGCAAACATGTGGTGCTCCTAGGAGAGACTGCCGGCATACATGTACAGCTCCTTGTCACCCTTCAACTCCATGTCCAGATACAAGATGCAAATTCCCTGTCACAATTACTTGTTCTTGTGGCCGAATAACAGAAAATGTTCCTTGTGATGCTGGTGGCAGTTGTGCTAATTATGATGCTGATACTGTACATGAAGCTTCCATTATTCAAAAGTTGCCTGTGCTTCTTCAACCCGTGGCTGCAAATGGCAAAAAAGTCCCCCTCGGACAAAGAAAACTGATGTGTAATGATGACTGTGCTAAGTTAGAGCGGAAAAGGGTTCTTGCAGATGCTTTTGAGATTACCGCTCCAAATCTGGATTCACTCCATTTTGGTGAGAATTCGGTTGCTTCTGAATTGCTGGCTGACATGTTGAGACGTGATTCTAAATGGGTTTTATCTGTTGAAGAGAGATGCAAGTTTTTAGTACTTGGCAAGAGCAGAGGAAATGCACATGGTCCAAAAGTCCATGTTTTCTGTCCTATGTTAAAGGACAAAAGAGATGCAGTGAGGGTGATTGCTGAGAGATGGAAGCTTGCAGTGAATGCAGCTGGTCGGGAGCCAAAGCATTTCGTAGTTGTTCATGTTACCCCAAAATCAAGAGCTCCTGCTCGTGTGCTAGGGTTTAAGGGTACTACAACTGTAAATGTACCCCTTCCTCCGGCATTTGATCCTTTGGTTGATATGGATCCTCGACTTGTTGTCTCTTTTATAGACTTACCAATGGATGCAGATATTAGTGCATTGGTGTTGAGATTTGGTGGTGAGTGTGAACTTGTTTGGTTAAATGACAAAAATGCATTGGCCGTTTTTAATGACCCTGCCCGTGCTGCAACTGCAATGAGGAGGTTGGATCATGGTACGGTTTATCAGGGAGCTGTGGTGGTGGTTGTTCCAAATGTCGGGGCATCAGTAGCATCTTCAGCTACCAATGCCTGGGGAGGATCTGGGACAATGAAAGGAGGAGCACTGGCAGCATTAAAGAGTAATCCATGGAAAAAGGATGTTATTCAAGAGCCAGGTTGGAGAGAAGATGCTTGGGGTGATGAGGAGTGGGCTACTGGTTCTGCTAATGTCAAATTGCCTATTCAGAAGAAAGAAGCCCGAATATCTGCTTCAGTAAATCCTTGGAGTGTCCTAAATCAAGAATCGTCTTCAAGTTCATCTGTTGCAGCCATTAAAATTGATGGTTCTAGGAAACACTCTGAAAGTAGTGTTATCACAAAGTTGGAGCCTCGTGATGGTGGTTCAAATCTAGGAGGGCAGCCTGCAGGAAACTTTGATGCTTTGGAAGCTTCTGATGTAGTAGATGATTGGGAGAAGGCTTGTGAATAG
Predicted protein sequences of Glyma.08g055900
>Glyma.08g055900.1.p sequence-type=predicted peptide transcript=Glyma.08g055900.1 locus=Glyma.08g055900 ID=Glyma.08g055900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSKERSQQPHSRVPRRQEWIRRDVGGCSNPRKPKKGSSSNSREESNLPQLLQEIQDKLVKGAVECMICYDMVRRSAPIWSCSGCFSIFHLTCIKKWARAPISVDLSVEKNQGGFNWRCPGCQSVQLTSSKDIRYLCFCGKRPDPPSDLYLMPHSCGEPCGKPLERDLQGDKELLCPHLCVLQCHPGPCPPCKAFAPPRLCPCGKKNITTRCSDRQSVLTCGQRCQKLLQCGRHRCQQICHLGPCHPCQVPINASCFCAQKMEVILCGEMAVKGEIRADGGVFSCGSTCQKKLNCGNHICIETCHPGSCGDCELLPSRIKTCCCGKTRLEEKRHSCLDPIPTCSQVCGKYLPCGIHHCEEPCHAGDCSPCLVLVSQKCRCGSTSRTVECCKTKMENEKFTCERPCGQKKNCGRHRCSERCCPLSNPNNILNADWDPHFCQLPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGKTSIPPPLPCGTPPPSCQLPCSVPQPCSHPASHSCHFGDCPPCSMPIAKECIGGHVVLRNIPCGSKDIKCNKLCGKTRQCGLHACGRTCHLPPCDNLSAVPGIRASCGQTCGAPRRDCRHTCTAPCHPSTPCPDTRCKFPVTITCSCGRITENVPCDAGGSCANYDADTVHEASIIQKLPVLLQPVAANGKKVPLGQRKLMCNDDCAKLERKRVLADAFEITAPNLDSLHFGENSVASELLADMLRRDSKWVLSVEERCKFLVLGKSRGNAHGPKVHVFCPMLKDKRDAVRVIAERWKLAVNAAGREPKHFVVVHVTPKSRAPARVLGFKGTTTVNVPLPPAFDPLVDMDPRLVVSFIDLPMDADISALVLRFGGECELVWLNDKNALAVFNDPARAATAMRRLDHGTVYQGAVVVVVPNVGASVASSATNAWGGSGTMKGGALAALKSNPWKKDVIQEPGWREDAWGDEEWATGSANVKLPIQKKEARISASVNPWSVLNQESSSSSSVAAIKIDGSRKHSESSVITKLEPRDGGSNLGGQPAGNFDALEASDVVDDWEKACE*






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