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Report for Sequence Feature Glyma.08g055000

Feature Type:gene_model
Chromosome:Gm08
Start:4239257
stop:4240701
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g055000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G67940.1AT non-intrinsic ABC protein 3 JGI N/AIEA
GO:0035435GO-bp phosphate ion transmembrane transport EnsemblGenomesN/AIEA
GO:0005774GO-cc vacuolar membrane EnsemblGenomesN/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0005315GO-mf inorganic phosphate transmembrane transporter activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016887GO-mf ATPase activity EnsemblGenomesN/AIEA
GO:0016887GO-mf ATPase activity JGI N/AIEA
KOG2355 KOG Predicted ABC-type transport, ATPase component/CCR4 associated factor JGI N/AIEA
PTHR24220Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24220:SF24Panther JGI N/AIEA
PF00005PFAM ABC transporter JGI N/AIEA

Expression Patterns of Glyma.08g055000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g055000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g05940 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g055000
>Glyma.08g055000.2 sequence-type=transcript locus=Glyma.08g055000 ID=Glyma.08g055000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GACGAAAATGAGCTGTTTTTAAAATAGTATCATATTGTAAATATAAAAATGATTTATGTGGGGGAGGAGTGATCCAGAGGAAGAATCTGACATGACCGAGGCAGGCTGTTTCTGGTTTCAACTTGTTATGATGGTGTCATCTTCTCCATTCTCATTCTCATTCTCTGTCGCTCACGGCTAGCAATCATGTCTTCTCGCTTAGATGAGTGCTTGTTGGAGGTGGATGGGTACGGTGATGGCGATGGAAAGGCGAAACCCAAATTCCTGATAAGGAATCTCAGCAGAGTTTCGGAGGATGGGGTTCCCATCCTCAAAGGCATAAATCTTGAGATCCCAGAGGGTGTGATCGTGGGAGTGATAGGCCCCAGTGGTAGCGGCAAGTCAACGTTCTTGAGGGCCCTTAACCGCCTCTGGGAGCCACCCTCCGCCTCCGTCTTCCTCGACGCCCAAGACATCTGCCATCTCGATGTCCTCTCTCTCCGCCGTAACGTTGCCATGCTCTTTCAGCTCCCGGCCCTCTTTGAAGGCAGCGTTGCGGACAATGTGAGGTACGGACCACAACTCAGAGGGAAAAAGCTAAGCGATGATGAGGTGCGCAAGTTGCTTCTAATGGCCGACCTGGATGCTTCTTTCATGGATAAGTCCGGGGCTGAACTCTCTGTCGGTCAAGCTCAAAGAGTTGCACTTGCTAGGACTTTAGCTAATTCACCCCAGTGCCTTAGATCCAATATCGACAGAAAACATAGAGGATGCCCTGGTGAAGCTGAACAAGAATCAGGGCATGACAGTCATCATGGTCTCTCATAGCATCAAGCAAATCCAAAGGATCGCTCACATAGTGTGCCTGCTTGTTGATGGTGAAATTGTTGAAGTTCTCAACCCTCATAATCTCTCTCAGGCCAACCATCCCATGGCTAAGAGGTTTCTTCAACTCAGTTCTTAAAGCCAAGATAAATCTACTTGCACCTGCTCGTTTATCGGCCACATATATATGTTCACCTCTCCTCGATTCATATCTTTCAATCAATTATCTTCCACATATGTTGCTTTAATTTCAAGACGTGCAGGTTGATGACATATATATGATTTTATGATAGTGGAGGTTTAGTTACCAATATGATATTGCAAAATGCTACTATAGAATAGGAATTTCGTTTTTCACCAAAACAAAACTATTGTCCACAGTTTTTTCTATTTGCAATACAACCAATTGGATGTAAGCGTACTCTTTGGTACAAGTTTCGTGAAGAAAGTTCTC

>Glyma.08g055000.3 sequence-type=transcript locus=Glyma.08g055000 ID=Glyma.08g055000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GACGAAAATGAGCTGTTTTTAAAATAGTATCATATTGTAAATATAAAAATGATTTATGTGGGGGAGGAGTGATCCAGAGGAAGAATCTGACATGACCGAGGCAGGCTGTTTCTGGTTTCAACTTGTTATGATGGTGTCATCTTCTCCATTCTCATTCTCATTCTCTGTCGCTCACGGCTAGCAATCATGTCTTCTCGCTTAGATGAGTGCTTGTTGGAGGTGGATGGGTACGGTGATGGCGATGGAAAGGCGAAACCCAAATTCCTGATAAGGAATCTCAGCAGAGTTTCGGAGGATGGGGTTCCCATCCTCAAAGGCATAAATCTTGAGATCCCAGAGGGTGTGATCGTGGGAGTGATAGGCCCCAGTGGTAGCGGCAAGTCAACGTTCTTGAGGGCCCTTAACCGCCTCTGGGAGCCACCCTCCGCCTCCGTCTTCCTCGACGCCCAAGACATCTGCCATCTCGATGTCCTCTCTCTCCGCCGTAACGTTGCCATGCTCTTTCAGCTCCCGGCCCTCTTTGAAGGCAGCGTTGCGGACAATGTGAGGTACGGACCACAACTCAGAGGGAAAAAGCTAAGCGATGATGAGGTGCGCAAGTTGCTTCTAATGGCCGACCTGGATGCTTCTTTCATGGATAAGTCCGGGGCTGAACTCTCTGTCGGTCAAGCTCAAAGAGTTGCACTTGCTAGGACTTTAGCTAATTCACCCCAGGTAACTTAATTATAACATAACATCCATCTCTTTTAACATTTTCTGTTTATTCATTTGTATGTTTTTTAATTTAAAGGTTTTGTTGCTGGATGAGCCAACTAGTGCCTTAGATCCAATATCGACAGAAAACATAGAGGATGCCCTGGTGAAGCTGAACAAGAATCAGGGCATGACAGTCATCATGGTCTCTCATAGCATCAAGCAAATCCAAAGGATCGCTCACATAGTGTGCCTGCTTGTTGATGGTGAAATTGTTGAAGTTCTCAACCCTCATAATCTCTCTCAGGCCAACCATCCCATGGCTAAGAGGTTTCTTCAACTCAGTTCTTAAAGCCAAGATAAATCTACTTGCACCTGCTCGTTTATCGGCCACATATATATGTTCACCTCTCCTCGATTCATATCTTTCAATCAATTATCTTCCACATATGTTGCTTTAATTTCAAGACGTGCAGGTTGATGACATATATATGATTTTATGATAGTGGAGGTTTAGTTACCAATATGATATTGCAAAATGCTACTATAGAATAGGAATTTCGTTTTTCACCAAAACAAAACTATTGTCCACAGTTTTTTCTATTTGCAATACAACCAATTGGATGTAAGCGTACTCTTTGGTACAAGTTTCGTGAAGAAAGTTCTC
Coding sequences of Glyma.08g055000
>Glyma.08g055000.1 sequence-type=CDS polypeptide=Glyma.08g055000.1.p locus=Glyma.08g055000 ID=Glyma.08g055000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTCTCGCTTAGATGAGTGCTTGTTGGAGGTGGATGGGTACGGTGATGGCGATGGAAAGGCGAAACCCAAATTCCTGATAAGGAATCTCAGCAGAGTTTCGGAGGATGGGGTTCCCATCCTCAAAGGCATAAATCTTGAGATCCCAGAGGGTGTGATCGTGGGAGTGATAGGCCCCAGTGGTAGCGGCAAGTCAACGTTCTTGAGGGCCCTTAACCGCCTCTGGGAGCCACCCTCCGCCTCCGTCTTCCTCGACGCCCAAGACATCTGCCATCTCGATGTCCTCTCTCTCCGCCGTAACGTTGCCATGCTCTTTCAGCTCCCGGCCCTCTTTGAAGGCAGCGTTGCGGACAATGTGAGGTACGGACCACAACTCAGAGGGAAAAAGCTAAGCGATGATGAGGTGCGCAAGTTGCTTCTAATGGCCGACCTGGATGCTTCTTTCATGGATAAGTCCGGGGCTGAACTCTCTGTCGGTCAAGCTCAAAGAGTTGCACTTGCTAGGACTTTAGCTAATTCACCCCAGGTTTTGTTGCTGGATGAGCCAACTAGTGCCTTAGATCCAATATCGACAGAAAACATAGAGGATGCCCTGGTGAAGCTGAACAAGAATCAGGGCATGACAGTCATCATGGTCTCTCATAGCATCAAGCAAATCCAAAGGATCGCTCACATAGTGTGCCTGCTTGTTGATGGTGAAATTGTTGAAGTTCTCAACCCTCATAATCTCTCTCAGGCCAACCATCCCATGGCTAAGAGGTTTCTTCAACTCAGTTCTTAA

>Glyma.08g055000.2 sequence-type=CDS polypeptide=Glyma.08g055000.2.p locus=Glyma.08g055000 ID=Glyma.08g055000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTCTCGCTTAGATGAGTGCTTGTTGGAGGTGGATGGGTACGGTGATGGCGATGGAAAGGCGAAACCCAAATTCCTGATAAGGAATCTCAGCAGAGTTTCGGAGGATGGGGTTCCCATCCTCAAAGGCATAAATCTTGAGATCCCAGAGGGTGTGATCGTGGGAGTGATAGGCCCCAGTGGTAGCGGCAAGTCAACGTTCTTGAGGGCCCTTAACCGCCTCTGGGAGCCACCCTCCGCCTCCGTCTTCCTCGACGCCCAAGACATCTGCCATCTCGATGTCCTCTCTCTCCGCCGTAACGTTGCCATGCTCTTTCAGCTCCCGGCCCTCTTTGAAGGCAGCGTTGCGGACAATGTGAGGTACGGACCACAACTCAGAGGGAAAAAGCTAAGCGATGATGAGGTGCGCAAGTTGCTTCTAATGGCCGACCTGGATGCTTCTTTCATGGATAAGTCCGGGGCTGAACTCTCTGTCGGTCAAGCTCAAAGAGTTGCACTTGCTAGGACTTTAGCTAATTCACCCCAGTGCCTTAGATCCAATATCGACAGAAAACATAGAGGATGCCCTGGTGAAGCTGAACAAGAATCAGGGCATGACAGTCATCATGGTCTCTCATAG

>Glyma.08g055000.3 sequence-type=CDS polypeptide=Glyma.08g055000.3.p locus=Glyma.08g055000 ID=Glyma.08g055000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTCTCGCTTAGATGAGTGCTTGTTGGAGGTGGATGGGTACGGTGATGGCGATGGAAAGGCGAAACCCAAATTCCTGATAAGGAATCTCAGCAGAGTTTCGGAGGATGGGGTTCCCATCCTCAAAGGCATAAATCTTGAGATCCCAGAGGGTGTGATCGTGGGAGTGATAGGCCCCAGTGGTAGCGGCAAGTCAACGTTCTTGAGGGCCCTTAACCGCCTCTGGGAGCCACCCTCCGCCTCCGTCTTCCTCGACGCCCAAGACATCTGCCATCTCGATGTCCTCTCTCTCCGCCGTAACGTTGCCATGCTCTTTCAGCTCCCGGCCCTCTTTGAAGGCAGCGTTGCGGACAATGTGAGGTACGGACCACAACTCAGAGGGAAAAAGCTAAGCGATGATGAGGTGCGCAAGTTGCTTCTAATGGCCGACCTGGATGCTTCTTTCATGGATAAGTCCGGGGCTGAACTCTCTGTCGGTCAAGCTCAAAGAGTTGCACTTGCTAGGACTTTAGCTAATTCACCCCAGGTAACTTAA
Predicted protein sequences of Glyma.08g055000
>Glyma.08g055000.1.p sequence-type=predicted peptide transcript=Glyma.08g055000.1 locus=Glyma.08g055000 ID=Glyma.08g055000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSRLDECLLEVDGYGDGDGKAKPKFLIRNLSRVSEDGVPILKGINLEIPEGVIVGVIGPSGSGKSTFLRALNRLWEPPSASVFLDAQDICHLDVLSLRRNVAMLFQLPALFEGSVADNVRYGPQLRGKKLSDDEVRKLLLMADLDASFMDKSGAELSVGQAQRVALARTLANSPQVLLLDEPTSALDPISTENIEDALVKLNKNQGMTVIMVSHSIKQIQRIAHIVCLLVDGEIVEVLNPHNLSQANHPMAKRFLQLSS*

>Glyma.08g055000.2.p sequence-type=predicted peptide transcript=Glyma.08g055000.2 locus=Glyma.08g055000 ID=Glyma.08g055000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSRLDECLLEVDGYGDGDGKAKPKFLIRNLSRVSEDGVPILKGINLEIPEGVIVGVIGPSGSGKSTFLRALNRLWEPPSASVFLDAQDICHLDVLSLRRNVAMLFQLPALFEGSVADNVRYGPQLRGKKLSDDEVRKLLLMADLDASFMDKSGAELSVGQAQRVALARTLANSPQCLRSNIDRKHRGCPGEAEQESGHDSHHGLS*

>Glyma.08g055000.3.p sequence-type=predicted peptide transcript=Glyma.08g055000.3 locus=Glyma.08g055000 ID=Glyma.08g055000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSRLDECLLEVDGYGDGDGKAKPKFLIRNLSRVSEDGVPILKGINLEIPEGVIVGVIGPSGSGKSTFLRALNRLWEPPSASVFLDAQDICHLDVLSLRRNVAMLFQLPALFEGSVADNVRYGPQLRGKKLSDDEVRKLLLMADLDASFMDKSGAELSVGQAQRVALARTLANSPQVT*






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