SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.08g054700

Feature Type:gene_model
Chromosome:Gm08
Start:4213306
stop:4217024
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.08g054700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G73590.1AT ATPIN1,PIN1 JGI N/AIEA
GO:0055085GO-bp transmembrane transport JGI N/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
K13947KEGG Transporters JGI N/AIEA
PTHR31752PantherFam AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED JGI N/AIEA
PF03547Pfam Membrane transport protein JGI N/AIEA

Proteins Associated with Glyma.08g054700
LocusGene SymbolProtein Name
PIN1A auxin efflux carrier component 1a
PIN1a PIN-formed 1 gene a

Gene model name correspondences to Glyma.08g054700 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g05900 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g054700
>Glyma.08g054700.1 sequence-type=CDS polypeptide=Glyma.08g054700.1.p locus=Glyma.08g054700 id=Glyma.08g054700.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGATAACGTTAACCGACTTTTACCATGTGATGACCGCAATGGTGCCACTGTACGTGGCCATGATACTCGCCTACGGCTCCGTGAAATGGTGGAAAATCTTCTCCCCGGACCAATGCTCTGGCATCAACCGGTTCGTTGCTCTGTTTGCGGTCCCTCTGCTCTCGTTCCACTTCATAGCCTCCAACAACCCCTACGAAATGAACTTCCGGTTCATCGCCGCCGACACGCTCCAGAAGATGATCGTGTTGGTTGTCCTGGGCATCTGGGCGAACGTGAGCAAGAGAGGGTGCTTGGAGTGGACCATAACGCTGTTCTCCATCTCCACCCTCCCAAACACGCTTGTGATGGGAATCCCCTTGCTCAAAGGCATGTACGGCGAGTTCTCGGGGAGTCTGATGGTCCAAATTGTGGTCCTCCAGTGCATCATCTGGTACACCTTGATGCTCTTCATGTTCGAGTACAGAGGCGCCAGATTGTTGATCTCTGAGCAGTTCCCAGACACTGCCGGTACCATTGTCTCCATCCATGTCGACTCTGATGTCATGTCTCTTGACGGACGACAGCACCCTCTGGAAACCGATGCCCAAATCAAAGAGGACGGCAAGCTCCACGTCACTGTCAGAAAATCCAACGCTTCCAGATCCGACATCTTTTCTAGAAGGTCCCAGGGCTTCTCTTCCACCACCCCTCGCCCTTCCAATCTCACCAATGCTGAGATTTACTCTCTTCAGTCCTCTCGAAACCCTACTCCACGTGGCTCCAGTTTCAACCACACCGATTTCTACTCCATGATGGCTGCTGGTCGTAATTCTAACTTTGGTGCCAACGATGTTTATGGCCTTTCTGCTTCCAGAGGACCAACTCCCAGACCTTCCAATTACGACGAGGATGCTTCTAATAATAACAATGGGAAGCCGAGGTACCACTACCCTGCTGCTGGAACAGGAACAGGAACAGGAACAGGAACGGGAACGGGAACAGGGCACTACCCTGCTCCTAACCCTGGCATGTTCTCTCCCACTGCTTCTAAAAACGTCGCCAAGAAGCCAGACGATCCAAATAAGGACCTTCATATGTTCGTTTGGAGTTCAAGTGCTTCCCCGGTTTCGGATGTGTTTGGTGGTGGACATGAATATGATCATAAAGAACTCAAGTTAACTGTATCTCCAGGAAAAGTGGAGGGTAATATTAATAGAGACACTCAAGAGGAGTACCAGCCAGAGAAAGATGAATTTAGTTTTGGAAACAGAGGGATTGAGGATGAGCATGAAGGTGAGAAAGTTGGAAACGGAAATCCAAAAACAATGCCTCCAGCAAGTGTAATGACGAGGCTTATTTTGATCATGGTGTGGAGGAAACTTATCAGAAACCCCAACACCTACTCCAGCCTAATCGGCCTAACTTGGTCACTCATTTCATTCAGGTGGAACGTAAAAATGCCAGCCATAATTGCCAAGTCTATTTCGATATTGTCAGATGCAGGGCTTGGGATGGCCATGTTTAGTCTTGGTCTGTTCATGGCTTTGCAACCGAGGATCATAGCATGTGGAAATTCCACAGCAGCTTTTTCTATGGCCGTGAGATTCCTTACAGGTCCAGCTGTCATGGCAGCTGCTTCCATTGCTGTTGGACTCAAAGGCGTTCTCTTGCACGTTGCTATTGTTCAGGCAGCTCTTCCTCAAGGAATTGTCCCATTTGTCTTTGCCAAGGAATACAATGTACATCCTGATATTCTCAGTACGGGTGTTATTTTTGGGATGTTGATTGCATTGCCCATTACGCTCGTGTACTACATCTTGCTGGGGTTATGA
Predicted protein sequences of Glyma.08g054700
>Glyma.08g054700.1.p sequence-type=predicted peptide transcript=Glyma.08g054700.1 locus=Glyma.08g054700 id=Glyma.08g054700.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MITLTDFYHVMTAMVPLYVAMILAYGSVKWWKIFSPDQCSGINRFVALFAVPLLSFHFIASNNPYEMNFRFIAADTLQKMIVLVVLGIWANVSKRGCLEWTITLFSISTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGTIVSIHVDSDVMSLDGRQHPLETDAQIKEDGKLHVTVRKSNASRSDIFSRRSQGFSSTTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMMAAGRNSNFGANDVYGLSASRGPTPRPSNYDEDASNNNNGKPRYHYPAAGTGTGTGTGTGTGTGHYPAPNPGMFSPTASKNVAKKPDDPNKDLHMFVWSSSASPVSDVFGGGHEYDHKELKLTVSPGKVEGNINRDTQEEYQPEKDEFSFGNRGIEDEHEGEKVGNGNPKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLISFRWNVKMPAIIAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSTAAFSMAVRFLTGPAVMAAASIAVGLKGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo