SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.08g054700

Feature Type:gene_model
Chromosome:Gm08
Start:4215529
stop:4219422
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g054700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G73590.1AT Auxin efflux carrier family protein JGI N/AIEA
GO:0009734GO-bp auxin-activated signaling pathway EnsemblGenomesN/AIEA
GO:0009926GO-bp auxin polar transport EnsemblGenomesN/AIEA
GO:0010252GO-bp auxin homeostasis EnsemblGenomesN/AIEA
GO:0010315GO-bp auxin efflux EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport JGI N/AIEA
GO:0005783GO-cc endoplasmic reticulum EnsemblGenomesN/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0010329GO-mf auxin efflux transmembrane transporter activity EnsemblGenomesN/AIEA
PF03547PFAM Membrane transport protein JGI N/AIEA

Proteins Associated with Glyma.08g054700
LocusGene SymbolProtein Name
PIN1A auxin efflux carrier component 1a
PIN1a PIN-formed 1 gene a

Expression Patterns of Glyma.08g054700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g054700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g05900 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g054700
>Glyma.08g054700.1 sequence-type=CDS polypeptide=Glyma.08g054700.1.p locus=Glyma.08g054700 ID=Glyma.08g054700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATAACGTTAACCGACTTTTACCATGTGATGACCGCAATGGTGCCACTGTACGTGGCCATGATACTCGCCTACGGCTCCGTGAAATGGTGGAAAATCTTCTCCCCGGACCAATGCTCTGGCATCAACCGGTTCGTTGCTCTGTTTGCGGTCCCTCTGCTCTCGTTCCACTTCATAGCCTCCAACAACCCCTACGAAATGAACTTCCGGTTCATCGCCGCCGACACGCTCCAGAAGATGATCGTGTTGGTTGTCCTGGGCATCTGGGCGAACGTGAGCAAGAGAGGGTGCTTGGAGTGGACCATAACGCTGTTCTCCATCTCCACCCTCCCAAACACGCTTGTGATGGGAATCCCCTTGCTCAAAGGCATGTACGGCGAGTTCTCGGGGAGTCTGATGGTCCAAATTGTGGTCCTCCAGTGCATCATCTGGTACACCTTGATGCTCTTCATGTTCGAGTACAGAGGCGCCAGATTGTTGATCTCTGAGCAGTTCCCAGACACTGCCGGTACCATTGTCTCCATCCATGTCGACTCTGATGTCATGTCTCTTGACGGACGACAGCACCCTCTGGAAACCGATGCCCAAATCAAAGAGGACGGCAAGCTCCACGTCACTGTCAGAAAATCCAACGCTTCCAGATCCGACATCTTTTCTAGAAGGTCCCAGGGCTTCTCTTCCACCACCCCTCGCCCTTCCAATCTCACCAATGCTGAGATTTACTCTCTTCAGTCCTCTCGAAACCCTACTCCACGTGGCTCCAGTTTCAACCACACCGATTTCTACTCCATGATGGCTGCTGGTCGTAATTCTAACTTTGGTGCCAACGATGTTTATGGCCTTTCTGCTTCCAGAGGACCAACTCCCAGACCTTCCAATTACGACGAGGATGCTTCTAATAATAACAATGGGAAGCCGAGGTACCACTACCCTGCTGCTGGAACAGGAACAGGAACAGGAACAGGAACGGGAACGGGAACAGGGCACTACCCTGCTCCTAACCCTGGCATGTTCTCTCCCACTGCTTCTAAAAACGTCGCCAAGAAGCCAGACGATCCAAATAAGGACCTTCATATGTTCGTTTGGAGTTCAAGTGCTTCCCCGGTTTCGGATGTGTTTGGTGGTGGACATGAATATGATCATAAAGAACTCAAGTTAACTGTATCTCCAGGAAAAGTGGAGGGTAATATTAATAGAGACACTCAAGAGGAGTACCAGCCAGAGAAAGATGAATTTAGTTTTGGAAACAGAGGGATTGAGGATGAGCATGAAGGTGAGAAAGTTGGAAACGGAAATCCAAAAACAATGCCTCCAGCAAGTGTAATGACGAGGCTTATTTTGATCATGGTGTGGAGGAAACTTATCAGAAACCCCAACACCTACTCCAGCCTAATCGGCCTAACTTGGTCACTCATTTCATTCAGGTGGAACGTAAAAATGCCAGCCATAATTGCCAAGTCTATTTCGATATTGTCAGATGCAGGGCTTGGGATGGCCATGTTTAGTCTTGGTCTGTTCATGGCTTTGCAACCGAGGATCATAGCATGTGGAAATTCCACAGCAGCTTTTTCTATGGCCGTGAGATTCCTTACAGGTCCAGCTGTCATGGCAGCTGCTTCCATTGCTGTTGGACTCAAAGGCGTTCTCTTGCACGTTGCTATTGTTCAGGCAGCTCTTCCTCAAGGAATTGTCCCATTTGTCTTTGCCAAGGAATACAATGTACATCCTGATATTCTCAGTACGGGTGTTATTTTTGGGATGTTGATTGCATTGCCCATTACGCTCGTGTACTACATCTTGCTGGGGTTATGA
Predicted protein sequences of Glyma.08g054700
>Glyma.08g054700.1.p sequence-type=predicted peptide transcript=Glyma.08g054700.1 locus=Glyma.08g054700 ID=Glyma.08g054700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MITLTDFYHVMTAMVPLYVAMILAYGSVKWWKIFSPDQCSGINRFVALFAVPLLSFHFIASNNPYEMNFRFIAADTLQKMIVLVVLGIWANVSKRGCLEWTITLFSISTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARLLISEQFPDTAGTIVSIHVDSDVMSLDGRQHPLETDAQIKEDGKLHVTVRKSNASRSDIFSRRSQGFSSTTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMMAAGRNSNFGANDVYGLSASRGPTPRPSNYDEDASNNNNGKPRYHYPAAGTGTGTGTGTGTGTGHYPAPNPGMFSPTASKNVAKKPDDPNKDLHMFVWSSSASPVSDVFGGGHEYDHKELKLTVSPGKVEGNINRDTQEEYQPEKDEFSFGNRGIEDEHEGEKVGNGNPKTMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLISFRWNVKMPAIIAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSTAAFSMAVRFLTGPAVMAAASIAVGLKGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo