Glyma.08g051200

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Report for Sequence Feature Glyma.08g051200

Feature Type:	gene_model
Chromosome:	Gm08
Start:	3981852
stop:	3993120
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g051200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G18070.1	AT	Translation elongation factor EF1A/initiation factor IF2gamma family protein	JGI	N/A	IEA
GO:0002184	GO-bp	cytoplasmic translational termination	EnsemblGenomes	N/A	IEA
GO:0005829	GO-cc	cytosol	EnsemblGenomes	N/A	IEA
GO:0018444	GO-cc	translation release factor complex	EnsemblGenomes	N/A	IEA
GO:0003747	GO-mf	translation release factor activity	EnsemblGenomes	N/A	IEA
GO:0003924	GO-mf	GTPase activity	EnsemblGenomes	N/A	IEA
GO:0003924	GO-mf	GTPase activity	JGI	N/A	IEA
GO:0005525	GO-mf	GTP binding	EnsemblGenomes	N/A	IEA
GO:0005525	GO-mf	GTP binding	JGI	N/A	IEA
KOG0459	KOG	Polypeptide release factor 3	JGI	N/A	IEA
PTHR23115	Panther	TRANSLATION FACTOR	JGI	N/A	IEA
PTHR23115:SF36	Panther	G1 TO S PHASE TRANSITION 1	JGI	N/A	IEA
PF00009	PFAM	Elongation factor Tu GTP binding domain	JGI	N/A	IEA
PF03143	PFAM	Elongation factor Tu C-terminal domain	JGI	N/A	IEA
PF03144	PFAM	Elongation factor Tu domain 2	JGI	N/A	IEA

Expression Patterns of Glyma.08g051200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g051200 not represented in the dataset	Glyma.08g051200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.08g051200

Paralog	Evidence	Comments
Glyma.05g243400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g051200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g05570	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.08g051200

Limit To All Plant Sequences

>Glyma.08g051200.2 sequence-type=transcript locus=Glyma.08g051200 ID=Glyma.08g051200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TAACAGAAGACAGTGGCAGACAGATAAATACTAAAGAGTGGCTTACTAGTCCCAAACCTCACACGACTCCTTTGTTGCGTTGTATTGCCTCTCTCGCCGAAACCCTCGTTTCCAACTTCTACAGAATCCATTTCTTCGCCATGGATATTGAGGAGGACATCCGTTCTTTGCAGCTCGATTCGGCAGAAGACAATAATGGGGTGGTAAATCCAGAGGATGGAAAGCCAGAAGAAGTTGAGAAATATGATAAGATGGATGAAGATCCAAAGCAGGAGGTTGAGGCTGAGCCAAAGGCTGTTGAGGCTGAGCCAAAAGTGAAAGATAAGGAGATTCCTTCTGTTCAAGATGAAGAAGATGTGCCTGAGATGACAAAAAGACACTTGAATGTTGTGTTTATTGGTCATGTTGATGCTGGTAAGTCTACAACTGGAGGCCAGATACTTTTCCTTAGTGGTCAAGTTGATGAACGGACTATCCAAAAATACGAGAAAGAGGCTAAGGACAAAAGTCGAGAAAGCTGGTATATGGCTTATATAATGGACACAAATGAGGAAGAGAGGGTAAAGGGAAAAACAGTTGAAGTTGGAAGAGCACATTTTGAGACTGAAACTACGAGGTTTACTATTTTGGATGCACCTGGTCACAAAAGTTATGTTCCCAACATGATTAGTGGTGCATCTCAAGCTGATATTGGGGTGTTGGTTATTTCTGCTCGGAAGGGAGAGTTTGAAACTGGATACGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACGCTGGGTGTGTCTAAGCTTCTTGTTGTTGTCAATAAAATGGATGAGCCTACAGTGCAATGGTCAAAAGAAAGGTATGATGAAATTGAGTCAAAGATGGTTCCATTTCTAAAGCAATCTGGATACAACGTAAAAAAAGATGTCTTGTTTTTACCAATTTCTGGTCTAATGGGTGCAAACATGAAAACAAGAGTGGATAAAAGTGTTTGTCCATGGTGGAACGGGCCTTGCTTATTTGAGGCACTTGACGCTATTGAAGTTCCACTGCGAGATCCCAAAGGTCCTTTCAGGATGCCTATTATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTTGAATCTGGCAGTGTTCGTGAGGGAGATTCCTTGTTGGTCATGCCAAATAAGGATCAAGTGAAAGTTGTTGCCATCTTTATTGATGAAGATCGTGTTAAACGTGCTGGACCTGGTGAAAATTTACGGATTAGATTATCTGGTGTTGAAGATGAAGACATTTTATCTGGGTTTGTTCTATCTAGTGTTGCTAATCCAATACCAGCAGTTACTGAGTTTGTTGCTCAGTTGGTGATCCTTGAACTGCTAGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTTCTGCACATCCACTCTGTGGTTGAGGAATGTGAGATTGTTGAACTCTTGCAGCAAATCGATACAAAGACAAAGAAGCCTATGAAAAAGAAAGTTCTGTTTGTGAAGAATGGTGCTGTTGTAATGTGCCGTGTTCAGGTGCATTATTTTGCATTGTGAATCTAGAAGCTAATTTTTCTTTCTTTTTTATCTTCTATATTGTATTGCTGTACATTATTAAAAAACATGTTTGGAGTTGTCATCATGTGACCAGGAGGTCATAGGTTTGAGTGTTGGAATCAGCCTCTTACAAGGTGAGGCTGTGTTCTAAATTCTAATGATCTACATGGTGGTTGACCCTGTCCTGCACATGGCAGGAGCTTTATGGTGCTGGACTGCCCTTATTGTGTTGCTGTATATGGGTTTCCTAGGGCTATGAAATG

Coding sequences of Glyma.08g051200

Limit To All Plant Sequences

>Glyma.08g051200.1 sequence-type=CDS polypeptide=Glyma.08g051200.1.p locus=Glyma.08g051200 ID=Glyma.08g051200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATATTGAGGAGGACATCCGTTCTTTGCAGCTCGATTCGGCAGAAGACAATAATGGGGTGGTAAATCCAGAGGATGGAAAGCCAGAAGAAGTTGAGAAATATGATAAGATGGATGAAGATCCAAAGCAGGAGGTTGAGGCTGAGCCAAAGGCTGTTGAGGCTGAGCCAAAAGTGAAAGATAAGGAGATTCCTTCTGTTCAAGATGAAGAAGATGTGCCTGAGATGACAAAAAGACACTTGAATGTTGTGTTTATTGGTCATGTTGATGCTGGTAAGTCTACAACTGGAGGCCAGATACTTTTCCTTAGTGGTCAAGTTGATGAACGGACTATCCAAAAATACGAGAAAGAGGCTAAGGACAAAAGTCGAGAAAGCTGGTATATGGCTTATATAATGGACACAAATGAGGAAGAGAGGGTAAAGGGAAAAACAGTTGAAGTTGGAAGAGCACATTTTGAGACTGAAACTACGAGGTTTACTATTTTGGATGCACCTGGTCACAAAAGTTATGTTCCCAACATGATTAGTGGTGCATCTCAAGCTGATATTGGGGTGTTGGTTATTTCTGCTCGGAAGGGAGAGTTTGAAACTGGATACGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACGCTGGGTGTGTCTAAGCTTCTTGTTGTTGTCAATAAAATGGATGAGCCTACAGTGCAATGGTCAAAAGAAAGGTATGATGAAATTGAGTCAAAGATGGTTCCATTTCTAAAGCAATCTGGATACAACGTAAAAAAAGATGTCTTGTTTTTACCAATTTCTGGTCTAATGGGTGCAAACATGAAAACAAGAGTGGATAAAAGTGTTTGTCCATGGTGGAACGGGCCTTGCTTATTTGAGGCACTTGACGCTATTGAAGTTCCACTGCGAGATCCCAAAGGTCCTTTCAGGATGCCTATTATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTTGAATCTGGCAGTGTTCGTGAGGGAGATTCCTTGTTGGTCATGCCAAATAAGGATCAAGTGAAAGTTGTTGCCATCTTTATTGATGAAGATCGTGTTAAACGTGCTGGACCTGGTGAAAATTTACGGATTAGATTATCTGGTGTTGAAGATGAAGACATTTTATCTGGGTTTGTTCTATCTAGTGTTGCTAATCCAATACCAGCAGTTACTGAGTTTGTTGCTCAGTTGGTGATCCTTGAACTGCTAGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTTCTGCACATCCACTCTGTGGTTGAGGAATGTGAGATTGTTGAACTCTTGCAGCAAATCGATACAAAGACAAAGAAGCCTATGAAAAAGAAAGTTCTGTTTGTGAAGAATGGTGCTGTTGTAATGTGCCGTGTTCAGGTTAATAACTCTATTTGCATTGAGAAGTTCTCTGATTTTCCCCAACTTGGGAGGTTCACTCTTCGCACTGAAGGAAAAACTGTTGCTGTGGGAAAAGTCACTGGTCTGTGA

>Glyma.08g051200.2 sequence-type=CDS polypeptide=Glyma.08g051200.2.p locus=Glyma.08g051200 ID=Glyma.08g051200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATATTGAGGAGGACATCCGTTCTTTGCAGCTCGATTCGGCAGAAGACAATAATGGGGTGGTAAATCCAGAGGATGGAAAGCCAGAAGAAGTTGAGAAATATGATAAGATGGATGAAGATCCAAAGCAGGAGGTTGAGGCTGAGCCAAAGGCTGTTGAGGCTGAGCCAAAAGTGAAAGATAAGGAGATTCCTTCTGTTCAAGATGAAGAAGATGTGCCTGAGATGACAAAAAGACACTTGAATGTTGTGTTTATTGGTCATGTTGATGCTGGTAAGTCTACAACTGGAGGCCAGATACTTTTCCTTAGTGGTCAAGTTGATGAACGGACTATCCAAAAATACGAGAAAGAGGCTAAGGACAAAAGTCGAGAAAGCTGGTATATGGCTTATATAATGGACACAAATGAGGAAGAGAGGGTAAAGGGAAAAACAGTTGAAGTTGGAAGAGCACATTTTGAGACTGAAACTACGAGGTTTACTATTTTGGATGCACCTGGTCACAAAAGTTATGTTCCCAACATGATTAGTGGTGCATCTCAAGCTGATATTGGGGTGTTGGTTATTTCTGCTCGGAAGGGAGAGTTTGAAACTGGATACGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACGCTGGGTGTGTCTAAGCTTCTTGTTGTTGTCAATAAAATGGATGAGCCTACAGTGCAATGGTCAAAAGAAAGGTATGATGAAATTGAGTCAAAGATGGTTCCATTTCTAAAGCAATCTGGATACAACGTAAAAAAAGATGTCTTGTTTTTACCAATTTCTGGTCTAATGGGTGCAAACATGAAAACAAGAGTGGATAAAAGTGTTTGTCCATGGTGGAACGGGCCTTGCTTATTTGAGGCACTTGACGCTATTGAAGTTCCACTGCGAGATCCCAAAGGTCCTTTCAGGATGCCTATTATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTTGAATCTGGCAGTGTTCGTGAGGGAGATTCCTTGTTGGTCATGCCAAATAAGGATCAAGTGAAAGTTGTTGCCATCTTTATTGATGAAGATCGTGTTAAACGTGCTGGACCTGGTGAAAATTTACGGATTAGATTATCTGGTGTTGAAGATGAAGACATTTTATCTGGGTTTGTTCTATCTAGTGTTGCTAATCCAATACCAGCAGTTACTGAGTTTGTTGCTCAGTTGGTGATCCTTGAACTGCTAGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTTCTGCACATCCACTCTGTGGTTGAGGAATGTGAGATTGTTGAACTCTTGCAGCAAATCGATACAAAGACAAAGAAGCCTATGAAAAAGAAAGTTCTGTTTGTGAAGAATGGTGCTGTTGTAATGTGCCGTGTTCAGGTGCATTATTTTGCATTGTGA

Predicted protein sequences of Glyma.08g051200

Limit To All Plant Sequences

>Glyma.08g051200.1.p sequence-type=predicted peptide transcript=Glyma.08g051200.1 locus=Glyma.08g051200 ID=Glyma.08g051200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDIEEDIRSLQLDSAEDNNGVVNPEDGKPEEVEKYDKMDEDPKQEVEAEPKAVEAEPKVKDKEIPSVQDEEDVPEMTKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLLVVVNKMDEPTVQWSKERYDEIESKMVPFLKQSGYNVKKDVLFLPISGLMGANMKTRVDKSVCPWWNGPCLFEALDAIEVPLRDPKGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKDQVKVVAIFIDEDRVKRAGPGENLRIRLSGVEDEDILSGFVLSSVANPIPAVTEFVAQLVILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDTKTKKPMKKKVLFVKNGAVVMCRVQVNNSICIEKFSDFPQLGRFTLRTEGKTVAVGKVTGL*

>Glyma.08g051200.2.p sequence-type=predicted peptide transcript=Glyma.08g051200.2 locus=Glyma.08g051200 ID=Glyma.08g051200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDIEEDIRSLQLDSAEDNNGVVNPEDGKPEEVEKYDKMDEDPKQEVEAEPKAVEAEPKVKDKEIPSVQDEEDVPEMTKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLLVVVNKMDEPTVQWSKERYDEIESKMVPFLKQSGYNVKKDVLFLPISGLMGANMKTRVDKSVCPWWNGPCLFEALDAIEVPLRDPKGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKDQVKVVAIFIDEDRVKRAGPGENLRIRLSGVEDEDILSGFVLSSVANPIPAVTEFVAQLVILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDTKTKKPMKKKVLFVKNGAVVMCRVQVHYFAL*

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