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Report for Sequence Feature Glyma.08g049500

Feature Type:gene_model
Chromosome:Gm08
Start:3868579
stop:3873443
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g049500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G73740.1AT UDP-Glycosyltransferase superfamily protein JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0030259GO-bp lipid glycosylation EnsemblGenomesN/AIEA
GO:0030259GO-bp lipid glycosylation JGI N/AIEA
GO:0016758GO-mf transferase activity, transferring hexosyl groups EnsemblGenomesN/AIEA
GO:0016758GO-mf transferase activity, transferring hexosyl groups JGI N/AIEA
GO:0030246GO-mf carbohydrate binding JGI N/AIEA
GO:0050511GO-mf undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity EnsemblGenomesN/AIEA
PTHR21015Panther GLYCOSYLTRANSFERASE JGI N/AIEA
PTHR21015:SF22Panther UDP-N-ACETYLGLUCOSAMINE--N-ACETYLMURAMYL-(PENTAPEPTIDE) PYROPHOSPHORYL-UNDECAPRENOL N-ACETYLGLUCOSAMINE TRANSFERASE JGI N/AIEA
PF03033PFAM Glycosyltransferase family 28 N-terminal domain JGI N/AIEA
PF04101PFAM Glycosyltransferase family 28 C-terminal domain JGI N/AIEA
GN7V-66274SoyCyc9-rxn undecaprenyldiphospho-muramoylpentapeptide β-N-acetylglucosaminyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.08g049500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g049500
ParalogEvidenceComments
Glyma.05g242000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g049500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g05420 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g049500
>Glyma.08g049500.1 sequence-type=CDS polypeptide=Glyma.08g049500.1.p locus=Glyma.08g049500 ID=Glyma.08g049500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGAGTATCAATCTCATGCCACTCATCACCCTCCAACTCCAACAATGACCCTATCCGCGTGGCGTTCTCCGGCGACGGCACCGGCAGCAACGTGTATCCTGCGTTGGCCATCGCGGAGGAGCTCAAAACCGCCAACCCCACGTGCCAGTTCCTCTTCTTGGGCACCCCCAACAGCGTGGAAAGCGCCGCAATCTCCTCCGCAGGCTACGACTTCGCCTCTGTCTCTTCACCACCCCAAAACCTGGTCTTCTTCCCTCAACGTCTCTTGAAGTCTCTCATCCAATGTCTCTGCCACCTCCGAGACTTCCAACCGCACGTGGTTGTCGGCACCGGCGGCTACGTCTCTTTCCCCGCCTGCATCGCTGCCAAGCTCAGAGGCGGCACCAACGTTGTCATCCACGAACCCAACTCTGTCCCTGGCTTCGCCAACTCTCTTCTTTCGTTCCTCGCTGATGCCATCTTCGTTGCTTTTAACTCCACACTCGATAGTTTCCCGAGGAACAAGTGTCTGGTGTGTGGTAACCCCGTGAGGTTGTCTATCAGGAACCTTGTTTCCAAGGCGACTGCGATGTCTCATTTTTTTCCCGATAGTGGCTTGTATGTTATTTGGCAAACCGGGGTTGAAGCCTTCGATGAAATGGATAGCCTTGTTAAAACTCATCCACGCTTGTATATCACACCGTTCATGCATTGTATGGATTTGGCATATGCAGCGGCAGACTTAATTGTTTCTAGAGCAGGCGCAATGACTTGCTATGAAATATCGGCAACTGGGAAACCATCTATCCTGATACCCTCGCCAAATTTCTCTGAGGGGAATCAATTCAGAAATGCTTCCTTGATGGCAGACGTAGCTGGTGTGACTGTTATTACTGAGGATGAGCTAGACTCAAGTACTCTAGCCATTGCAATTGAAAAGATTGGGGACAAGAAGATGGAAGATATGTCTGAGAGGGCTCTGAAAGCTGCAAACCCCAATGCATCTCCTTAG
Predicted protein sequences of Glyma.08g049500
>Glyma.08g049500.1.p sequence-type=predicted peptide transcript=Glyma.08g049500.1 locus=Glyma.08g049500 ID=Glyma.08g049500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
RVSISCHSSPSNSNNDPIRVAFSGDGTGSNVYPALAIAEELKTANPTCQFLFLGTPNSVESAAISSAGYDFASVSSPPQNLVFFPQRLLKSLIQCLCHLRDFQPHVVVGTGGYVSFPACIAAKLRGGTNVVIHEPNSVPGFANSLLSFLADAIFVAFNSTLDSFPRNKCLVCGNPVRLSIRNLVSKATAMSHFFPDSGLYVIWQTGVEAFDEMDSLVKTHPRLYITPFMHCMDLAYAAADLIVSRAGAMTCYEISATGKPSILIPSPNFSEGNQFRNASLMADVAGVTVITEDELDSSTLAIAIEKIGDKKMEDMSERALKAANPNASP*






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