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Report for Sequence Feature Glyma.08g048100

Feature Type:gene_model
Chromosome:Gm08
Start:3748084
stop:3754201
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g048100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G20000.1AT translocase of the outer mitochondrial membrane 40 JGI N/AIEA
GO:0030150GO-bp protein import into mitochondrial matrix EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport JGI N/AIEA
GO:0005741GO-cc mitochondrial outer membrane EnsemblGenomesN/AIEA
GO:0005741GO-cc mitochondrial outer membrane JGI N/AIEA
GO:0005742GO-cc mitochondrial outer membrane translocase complex EnsemblGenomesN/AIEA
GO:0008320GO-mf protein transmembrane transporter activity EnsemblGenomesN/AIEA
KOG3296 KOG Translocase of outer mitochondrial membrane complex, subunit TOM40 JGI N/AIEA
PTHR10802Panther MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM40 JGI N/AIEA
PF01459PFAM Eukaryotic porin JGI N/AIEA

Expression Patterns of Glyma.08g048100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g048100
ParalogEvidenceComments
Glyma.05g241100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g048100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g05280 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g048100
>Glyma.08g048100.1 sequence-type=CDS polypeptide=Glyma.08g048100.1.p locus=Glyma.08g048100 ID=Glyma.08g048100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGACCCTCATTCCTCCCCCTCCTCCCCCTCCTCCTCCTCCTGCCGCCGCCGCCGACCCCAAGGTCGATTACTTGAACCTCCCATGTCCAATTCCCTTCGAAGAGCTCCATCGCGAAGCTATGATGTCTTTGAAGCCAGATCTTTTTGAGGGCATGCGTTTTGATTTCACCAAGATGCTCAATCAGAAGTTCTCCCTCAATCACAGCGTGTTGATGGGACCTACTGAGGTTCCTTCTCAGTCCACGGAGACTATTAAGATTCCAACTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCTAGGTTGTTGCTCTGGGGGAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTCAAGTGTGATTTGTCCGAAAATCTCACTTTTAAAGCCAATGCTCAGCTCACAAATGAGCCGCATATGTCTCATGCGATGATCAACTTTGATTACAAGGGAAAAGACTATAGAACCCAATTTCAACTTGGTAATGGAGCCTTGCTAGGAGCAAGTTATATTCAGAGTGTGACACAGCATTTATCATTGGGTGGGGAGGTATTTTGGGCCGGTCAGCATCGGAAGTCTGGTATTGGTTATGCTGCTCGCTACAACACTGATAAATCGGTTGCTACCGGGCAAGTTGCTAGCACTGGAATGGTTCTTCTAAGCTATGTTCAGAAGGTATCTGAGAAGGTTTCTCTAGCATCTGAGTTTATGTGCAACTACTTGTCAAGAGATGTCACAGCTAGCTTTGGTTACGACTACATCCTTAGACAGTGCCGCCTTAGGGGAAAGATTGACTCCAATGGCTGTGTTGCTGCTTTTTTGGAGGAGCGGTTAAATATGGGTCTGAATTTTATTCTTTCTGCAGAGCTTGACCACAGGAAAAAAGACTACAAATTTGGGTTTGGTTTGACCGTTGGAGAATGA
Predicted protein sequences of Glyma.08g048100
>Glyma.08g048100.1.p sequence-type=predicted peptide transcript=Glyma.08g048100.1 locus=Glyma.08g048100 ID=Glyma.08g048100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATLIPPPPPPPPPPAAAADPKVDYLNLPCPIPFEELHREAMMSLKPDLFEGMRFDFTKMLNQKFSLNHSVLMGPTEVPSQSTETIKIPTAHYEFGSTFIDHPRLLLWGRILTDGRLNARVKCDLSENLTFKANAQLTNEPHMSHAMINFDYKGKDYRTQFQLGNGALLGASYIQSVTQHLSLGGEVFWAGQHRKSGIGYAARYNTDKSVATGQVASTGMVLLSYVQKVSEKVSLASEFMCNYLSRDVTASFGYDYILRQCRLRGKIDSNGCVAAFLEERLNMGLNFILSAELDHRKKDYKFGFGLTVGE*






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