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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G14810.1 | AT | semialdehyde dehydrogenase family protein | JGI | N/A | IEA |
| GO:0008652 | GO-bp | cellular amino acid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0008652 | GO-bp | cellular amino acid biosynthetic process | JGI | N/A | IEA |
| GO:0009086 | GO-bp | methionine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009088 | GO-bp | threonine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009089 | GO-bp | lysine biosynthetic process via diaminopimelate | EnsemblGenomes | N/A | IEA |
| GO:0009097 | GO-bp | isoleucine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | JGI | N/A | IEA |
| GO:0003942 | GO-mf | N-acetyl-gamma-glutamyl-phosphate reductase activity | EnsemblGenomes | N/A | IEA |
| GO:0003942 | GO-mf | N-acetyl-gamma-glutamyl-phosphate reductase activity | JGI | N/A | IEA |
| GO:0004073 | GO-mf | aspartate-semialdehyde dehydrogenase activity | EnsemblGenomes | N/A | IEA |
| GO:0016620 | GO-mf | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | EnsemblGenomes | N/A | IEA |
| GO:0016620 | GO-mf | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | JGI | N/A | IEA |
| GO:0046983 | GO-mf | protein dimerization activity | EnsemblGenomes | N/A | IEA |
| GO:0046983 | GO-mf | protein dimerization activity | JGI | N/A | IEA |
| GO:0050661 | GO-mf | NADP binding | EnsemblGenomes | N/A | IEA |
| GO:0051287 | GO-mf | NAD binding | EnsemblGenomes | N/A | IEA |
| GO:0051287 | GO-mf | NAD binding | JGI | N/A | IEA |
| KOG4777 | KOG | Aspartate-semialdehyde dehydrogenase | JGI | N/A | IEA |
| PTHR10174 | Panther | RETINALDEHYDE BINDING PROTEIN-RELATED | JGI | N/A | IEA |
| PF01118 | PFAM | Semialdehyde dehydrogenase, NAD binding domain | JGI | N/A | IEA |
| PF02774 | PFAM | Semialdehyde dehydrogenase, dimerisation domain | JGI | N/A | IEA |
| HOMOSERSYN-PWY | SoyCyc9 | L-homoserine biosynthesis | Plant Metabolic Network | ISS | |
| PWY-3001 | SoyCyc9 | superpathway of L-isoleucine biosynthesis I | Plant Metabolic Network | ISS | |
| PWY-5097 | SoyCyc9 | L-lysine biosynthesis VI | Plant Metabolic Network | ISS | |
| PWY-724 | SoyCyc9 | superpathway of L-lysine, L-threonine and L-methionine biosynthesis II | Plant Metabolic Network | ISS | |
| THRESYN-PWY | SoyCyc9 | superpathway of L-threonine biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-50871 | SoyCyc9-rxn | aspartate-semialdehyde dehydrogenase | Plant Metabolic Network | ISS |
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Glyma.08g047800 not represented in the dataset |
Glyma.08g047800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.05g240700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g05250 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g047800.1 sequence-type=CDS polypeptide=Glyma.08g047800.1.p locus=Glyma.08g047800 ID=Glyma.08g047800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGATGATGTCTTCACTCTCTGTTTCGCGCCACAACCACCTCTTCTCGGGCCCTCTCCCGGCCCGGCCCAAGCCCAAGCCCAGCTTTTCCTCTTCCAGGATCCGAATGTCCCTCCAAGAAAACGGCCCCTCCATCGCCGTCGTGGGCGTCACCGGCGCCGTCGGCCAGGAGTTCCTCTCCGTCCTCTCCGACCGCGACTTCCCCTACAGCTCCATCAAAATGCTCGCGTCCAAGCGCTCCGCTGGGCGCCGCATCACCTTTGAGGACAGGGACTACGTCGTGGAGGAGCTGACGGCGGAGAGCTTCGATGGCGTCGACATCGCGCTCTTCAGCGCCGGCGGCTCCATTAGCAAGTACTTCGGCCCCATCGCCGTCGATCGGGGAACGGTGGTCGTCGACAACAGCTCCGCGTTTCGGATGGACGAGAATGTCCCATTGGTAATTCCCGAAGTGAACCCGGAAGCAATGCAAAACATCAAAGCCGGAACTGGAAAGGGCGCACTCATTGCTAACCCTAATTGCTCCACCATTATATGCTTGATGGCTGCTACCCCTCTTCATCGACGTGCCAAGGTGTTACGTATGGTTGTTAGTACCTATCAGGCTGCTAGTGGTGCGGGTGCTGCTGCAATGGAAGAGCTTCAGCTGCAAACTCGTGAGGTGTTGGAAGGAAAACCGCCCACTTGTAAAATATTTAACCGACAGTATGCTTTTAATCTATTCTCGCATAATGCGTCTGTTCTTTCAAATGGATATAATGAAGAAGAAATGAAAATGGTCAAGGAGACCAGGAAAATCTGGAATAATAAGGACGTTAAAGTAACTGCCACATGCATACGAGTTCCTGTCATGCGAGCTCATGCTGAGAGTGTGAATCTTCAATTTGAAACACCCCTTGATGAGGACACTGCAAGAGATATTCTGAAGAATGCTCCAGGTGTAGTGGTTATTGATGATCGTGAATCCAATCATTTTCCTACTCCATTGGAAGTTTCAAACAAGGATGATGTTGCTGTTGGTAGGATTCGCCAGGACCTATCTCAGGATGGGAACCAAGGGTTGGACATCTTTGTATGTGGGGATCAAATTCGCAAGGGAGCTGCACTTAACGCAATCCAGATTGCTGAGATGTTGCTATGA
>Glyma.08g047800.1.p sequence-type=predicted peptide transcript=Glyma.08g047800.1 locus=Glyma.08g047800 ID=Glyma.08g047800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MMMSSLSVSRHNHLFSGPLPARPKPKPSFSSSRIRMSLQENGPSIAVVGVTGAVGQEFLSVLSDRDFPYSSIKMLASKRSAGRRITFEDRDYVVEELTAESFDGVDIALFSAGGSISKYFGPIAVDRGTVVVDNSSAFRMDENVPLVIPEVNPEAMQNIKAGTGKGALIANPNCSTIICLMAATPLHRRAKVLRMVVSTYQAASGAGAAAMEELQLQTREVLEGKPPTCKIFNRQYAFNLFSHNASVLSNGYNEEEMKMVKETRKIWNNKDVKVTATCIRVPVMRAHAESVNLQFETPLDEDTARDILKNAPGVVVIDDRESNHFPTPLEVSNKDDVAVGRIRQDLSQDGNQGLDIFVCGDQIRKGAALNAIQIAEMLL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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