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Report for Sequence Feature Glyma.08g046600

Feature Type:gene_model
Chromosome:Gm08
Start:3663262
stop:3665862
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g046600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G29990.1AT prefoldin 6 JGI N/AIEA
GO:0006457GO-bp protein folding EnsemblGenomesN/AIEA
GO:0006457GO-bp protein folding JGI N/AIEA
GO:0051131GO-bp chaperone-mediated protein complex assembly EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0016272GO-cc prefoldin complex EnsemblGenomesN/AIEA
GO:0016272GO-cc prefoldin complex JGI N/AIEA
GO:0051082GO-mf unfolded protein binding EnsemblGenomesN/AIEA
GO:0051082GO-mf unfolded protein binding JGI N/AIEA
GO:0051087GO-mf chaperone binding EnsemblGenomesN/AIEA
KOG3478 KOG Prefoldin subunit 6, KE2 family JGI N/AIEA
PTHR21431Panther PREFOLDIN SUBUNIT 6 JGI N/AIEA
PF01920PFAM Prefoldin subunit JGI N/AIEA

Expression Patterns of Glyma.08g046600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g046600 not represented in the dataset
Glyma.08g046600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g046600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g05140 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g046600
>Glyma.08g046600.2 sequence-type=transcript locus=Glyma.08g046600 ID=Glyma.08g046600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTTTGGGCCGACCCAACAATAAGAAGAAGAAAAGCACAATGAACCGAAGAAGGTCAGAACTGAGAAACGCAATGAGTTCGTCGAACCTCAGAGATCTTCAACGCGAATTGGAGAACAAAGCCAATGATCTCAGCAAGCTTCAAAAGGAAATTGCGAAGAATCACCAAATGAGAAAGAAATACACGGTCCAGCTTGGCGAGAACGAGCTCGTCCTTAAGGAACTGGATTTATTGAAAGACGACGCAAATGTTTATAAGTTGATTGGGCCAGTACTTGTTAAGCAAGATTTGGCCGAGGCCAATGCAAATGTCCGCAAGAGAATCGAATACATCTCAGCTGAATTCGTCTGGATGCCACTGTTCAAGATTTGGAAGAGAAGCAAAATAGCAAGAAAGATACGATACTAAAATTGCAACAAAGGATTCAATCATTTCAGGCTGGGAAAGGCAAGGCGTAGTTTTCCCTCACATATTGTTCCAGGCATTGTGATTTAACCGTGCTACTGCTAAGGTTGGATGTGGATTTGTATTTTGTGCCTCTTTGTTTTGGACTGAAGTTGACTCTTAGGAATCTGTTACGGGAAACAGCTTGGAAATTAGACTGATATTAATATATTCCCTCCGTCCCTGCCTATTTATAAGACATGTTTTTTGTTTACCTTATTATAAGATTTTTTTAATCTCTCTTGTGTATTAATTATTTTGACTAAAATATCTTG
Coding sequences of Glyma.08g046600
>Glyma.08g046600.1 sequence-type=CDS polypeptide=Glyma.08g046600.1.p locus=Glyma.08g046600 ID=Glyma.08g046600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACCGAAGAAGGTCAGAACTGAGAAACGCAATGAGTTCGTCGAACCTCAGAGATCTTCAACGCGAATTGGAGAACAAAGCCAATGATCTCAGCAAGCTTCAAAAGGAAATTGCGAAGAATCACCAAATGAGAAAGAAATACACGGTCCAGCTTGGCGAGAACGAGCTCGTCCTTAAGGAACTGGATTTATTGAAAGACGACGCAAATGTTTATAAGTTGATTGGGCCAGTACTTGTTAAGCAAGATTTGGCCGAGGCCAATGCAAATGTCCGCAAGAGAATCGAATACATCTCAGCTGAATTGAAGCGTCTGGATGCCACTGTTCAAGATTTGGAAGAGAAGCAAAATAGCAAGAAAGATACGATACTAAAATTGCAACAAAGGATTCAATCATTTCAGGCTGGGAAAGGCAAGGCGTAG

>Glyma.08g046600.2 sequence-type=CDS polypeptide=Glyma.08g046600.2.p locus=Glyma.08g046600 ID=Glyma.08g046600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACCGAAGAAGGTCAGAACTGAGAAACGCAATGAGTTCGTCGAACCTCAGAGATCTTCAACGCGAATTGGAGAACAAAGCCAATGATCTCAGCAAGCTTCAAAAGGAAATTGCGAAGAATCACCAAATGAGAAAGAAATACACGGTCCAGCTTGGCGAGAACGAGCTCGTCCTTAAGGAACTGGATTTATTGAAAGACGACGCAAATGTTTATAAGTTGATTGGGCCAGTACTTGTTAAGCAAGATTTGGCCGAGGCCAATGCAAATGTCCGCAAGAGAATCGAATACATCTCAGCTGAATTCGTCTGGATGCCACTGTTCAAGATTTGGAAGAGAAGCAAAATAGCAAGAAAGATACGATACTAA
Predicted protein sequences of Glyma.08g046600
>Glyma.08g046600.1.p sequence-type=predicted peptide transcript=Glyma.08g046600.1 locus=Glyma.08g046600 ID=Glyma.08g046600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNRRRSELRNAMSSSNLRDLQRELENKANDLSKLQKEIAKNHQMRKKYTVQLGENELVLKELDLLKDDANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATVQDLEEKQNSKKDTILKLQQRIQSFQAGKGKA*

>Glyma.08g046600.2.p sequence-type=predicted peptide transcript=Glyma.08g046600.2 locus=Glyma.08g046600 ID=Glyma.08g046600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNRRRSELRNAMSSSNLRDLQRELENKANDLSKLQKEIAKNHQMRKKYTVQLGENELVLKELDLLKDDANVYKLIGPVLVKQDLAEANANVRKRIEYISAEFVWMPLFKIWKRSKIARKIRY*






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