SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.08g046500

Feature Type:gene_model
Chromosome:Gm08
Start:3658444
stop:3661735
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g046500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G68050.1AT flavin-binding, kelch repeat, f box 1 JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0007165GO-bp signal transduction JGI N/AIEA
GO:0004871GO-mf signal transducer activity JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG4693 KOG Uncharacterized conserved protein, contains kelch repeat JGI N/AIEA
PTHR23244Panther KELCH REPEAT DOMAIN JGI N/AIEA
PTHR23244:SF107Panther JGI N/AIEA
PF00646PFAM F-box domain JGI N/AIEA
PF00989PFAM PAS fold JGI N/AIEA
PF07646PFAM Kelch motif JGI N/AIEA

Proteins Associated with Glyma.08g046500
LocusGene SymbolProtein Name
ADO3 Adagio 3 like gene
FKF2 Flavin-binding Kelch Repeat F-Box 2 gene

Expression Patterns of Glyma.08g046500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g046500
ParalogEvidenceComments
Glyma.05g239400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g046500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g05130 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g046500
>Glyma.08g046500.1 sequence-type=CDS polypeptide=Glyma.08g046500.1.p locus=Glyma.08g046500 ID=Glyma.08g046500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAGTAGTTGCTTGTGCTCACTCTTCATTTTTGAATCAGACATGGCCATGCCAAAAGAGAAAGAGGATGTTCAGAACAGTGGGAAGAGATTGAAATGTACGAGGAATGAAGAAGAAGAAAAAGAACAATATGAACAAGTTGAAGCTGATGAAGAAGAAGAAGAAGAAGAAGACAGTGAGCTTCCTCTAAAGCTAGGATTGTTCTTCTACCCAACAATACCCACTTCCTTTGTTGTATCTGATGCTCTTGAACCCGATTTTCCCATCATATATGTCAACAAGGTCTTTGAAATCGCCACTGGATATCGTGCTGACGAGGCCCTCGGTCGCAACTGTCGGTTCTTGCAGTATAGAGATCGTCGAGCTCAGAGGCGGCACCCTTTGGTGGATCCTGTTGTTGTGTCTGAGATTAGAAGATGTCTTGAGGAAGGTGTTGAGTTCCAAGGTGAACTTCTGAATTTCAGAAAGGATGGCACTCCTTTGGTGAACAGAGTGAGACTTACACTAATTCATGATGATGACGGGACTGTGACACACGTAATAGGTATCCAACTCTTTTCCGAGGCAAATATAGATCTGAACCGTGTCTCATATCCAGTCTTCAAAGAGACTTGCAATCAAGATTTTGACAAGAATGGTAAATATACTCCTAAGAGTGGACAATCATTGTACAGTCAGCACCAAGAGATGTGCAGCATTCTTCAGCTTTCTGATGAAGTCTTGGCTCACAACATTTTGTCACGCTTGACACCCAGGGATGTTGCATCCATTGGGTCTGTATGCAGGAGGGTCCGTCAATTAACAAAGAATGAGCATGTCAGGAAGATGGTATGTCAAAATGCATGGGGCAAAGAAGTGACGGGCACATTGGAACTGATGACCAAGAAGATGGGATGGGGTCGCCTGACTCGGGAACTTACCACTCTTGAAGCTGTTTGTTGGAGAAAACTGACAGTTGGAGGTGCAGTGGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCTGCAGGAAACCGACTTGTATTGTTTGGAGGTGAAGGAGTGGATATGCAACCTATGGATGACACTTTTGTTCTAAATCTTGATGCTAAAAATCCAGAATGGCGCAGGGTTAGTGTGAAATCATCCCCACCCGGAAGGTGGGGCCACACGCTCTCGTGTTTAAATGGTTCTTGGTTGGTGGTTTTTGGTGGGTGTGGTAGGCAAGGATTGCTCAATGATGTGTTTGTGCTTGATTTGGATGCTCAACAGCCAACATGGAGGGAGGTTTGTGGTGGAACCCCACCACTTCCTAGATCATGGCACAGCTCTTGCACAATTGAAGGGTCCAAATTGGTTGTCTCCGGCGGGTGCACAGACACCGGGGTACTTCTTAGTGACACGTATTTACTGGACCTCACAACAGATAATCCAATATGGAGAGAAATTCCAACTTCATGGGCTCCTCCTTCTCGGTTGGGCCACTCACTCTCAGTCTATGGGAGGACAAAGATTCTCATGTTTGGTGGACTTGCCAAGAGTGGACACTTGCGGCTACGATCAGGTGAGGCTTATACAATTGACTTAGAAGATGAACAACCACAATGGAGGCAACTAGAATATAGCGCATTCACGGGTTTAGCCAGTCAAAGTGCTGTTGTTCCTCCTCCTAGGCTGGATCATGTTGCTGTCAGCATGCCTTGTGGGAGGATCATTATATTTGGAGGTTCCATTGCTGGTCTTCACTCACCATCTCAGCTCTTTCTGTTGGACCCTTCTGAAGAGAAACCATCCTGGAGGATCCTCAATGTTCCAGGGCAACCACCTAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGGGTGTTGGTGTTGGGTGGACACACTGGGGAGGAATGGATACTGAATGAGTTGCACGAGTTATGCTTGGCAAGTCGACATGACTCTGACCTGTGA
Predicted protein sequences of Glyma.08g046500
>Glyma.08g046500.1.p sequence-type=predicted peptide transcript=Glyma.08g046500.1 locus=Glyma.08g046500 ID=Glyma.08g046500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSSCLCSLFIFESDMAMPKEKEDVQNSGKRLKCTRNEEEEKEQYEQVEADEEEEEEEDSELPLKLGLFFYPTIPTSFVVSDALEPDFPIIYVNKVFEIATGYRADEALGRNCRFLQYRDRRAQRRHPLVDPVVVSEIRRCLEEGVEFQGELLNFRKDGTPLVNRVRLTLIHDDDGTVTHVIGIQLFSEANIDLNRVSYPVFKETCNQDFDKNGKYTPKSGQSLYSQHQEMCSILQLSDEVLAHNILSRLTPRDVASIGSVCRRVRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKMGWGRLTRELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWREVCGGTPPLPRSWHSSCTIEGSKLVVSGGCTDTGVLLSDTYLLDLTTDNPIWREIPTSWAPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEQPQWRQLEYSAFTGLASQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRHDSDL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo