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Report for Sequence Feature Glyma.08g045000

Feature Type:gene_model
Chromosome:Gm08
Start:3567453
stop:3570413
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g045000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G63380.1AT ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein JGI N/AIEA
GO:0006811GO-bp ion transport EnsemblGenomesN/AIEA
GO:0006816GO-bp calcium ion transport EnsemblGenomesN/AIEA
GO:0070588GO-bp calcium ion transmembrane transport EnsemblGenomesN/AIEA
GO:0099132GO-bp ATP hydrolysis coupled cation transmembrane transport EnsemblGenomesN/AIEA
GO:0005887GO-cc integral component of plasma membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0043231GO-cc intracellular membrane-bounded organelle EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding JGI N/AIEA
GO:0005388GO-mf calcium-transporting ATPase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding JGI N/AIEA
KOG0204 KOG Calcium transporting ATPase JGI N/AIEA
PTHR24093Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24093:SF73Panther JGI N/AIEA
PF00122PFAM E1-E2 ATPase JGI N/AIEA
PF00689PFAM Cation transporting ATPase, C-terminus JGI N/AIEA
PF00690PFAM Cation transporter/ATPase, N-terminus JGI N/AIEA
PF00702PFAM haloacid dehalogenase-like hydrolase JGI N/AIEA
PWY-6188SoyCyc9 calmodulin regulated calcium transport Plant Metabolic Network ISS

Expression Patterns of Glyma.08g045000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.08g045000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g04980 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.08g045000
>Glyma.08g045000.1 sequence-type=CDS polypeptide=Glyma.08g045000.1.p locus=Glyma.08g045000 ID=Glyma.08g045000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGAGACCCTATGCAGCATACCCCATGACATGCAAGAAGAGGTGGCGAATGGCTTTGAATGCCATCTCTTTCGTCAAGACTCTTCACCATCTCTCCAACAAAGCTTTTCACATCAATACCCCAACCCAGCTCTTGCGCTCCTTCTCGTACCTTTCCATTGGCGTTGCTCCAGAAGAACCCTCCTTCAACAACGTTGATCCCAAACTTCTCAGCGATATGGTGAGGGAAAAAAGCAGCGAGTCTCTCACCCAACTTGGAGGCGTCAAAGAACTCGCCAAACTTCTTGAAACCGACGTGAAGCGTGGCATCAGAGACATTGATAACCGAAAACGTGTCTTCGGTGAAAACACGTTCACGAAACCTCCATCCAAAGGTTTTCTTTCTTTTGTCCTAGAATCTTTTAAAGATCCCACTATCATTATTCTTTTGGTTTGCGCTGTTCTTTCACTTGGCTTCGGCATCAAGCAACATGGCTGGAAGGATGGATGGTACGATGGAGGAAGCATCATACTGGCGGTTGTTCTCGTCATTGTTGTCTCTTCCGTCAGCAACTTCAACCAATCTAGACAATTCCAGAAGCTTTCAGCGAAAAGTGACAACTTAGGAGTGGAAGTGGTACGAGGTGGTAGACGCCAAAGGGTGTCAATCTTTGAGGTGGTGGTCGGTGACGTTGCTTACTTGAAGATCGGTGATCAGGTTCCAGCAGATGGGGTGTTTTTAGAGGGTCATTCGTTGAAGGTGGACGAGTCTAGCATGACGGGGGAGAGTGACCACGTGCATGTGAACGGTGACACGAACCCTTTCTTGTTATCTGGCACAAAGGTCACTGATGGTTTTGCACACATGCTTGTTACTTGTGTGGGTATGAACACTGCATGGGGTGCCATGATGGGTTCCATAACGAGAGAGGTCAATGAGGAGACACCTTTGCAGGTGCGTCTCAACAAATTGACTTCTGCTATTGGCAAGGTTGGTTTGTTTGTGGCTGCAATTGTTTTGGTGGTGTCTATGATACGGTACTTGACGGGAAGTACCAGAGATGACTTTGGGATCCGAGAATTTGTTCGGGGAAAGACTAAGTCTGAGGATGTCATGAATGCGGTTGTGGGGATTGTTGCTGCGGCTGTGACAATTGTGGTGGTGGCTATTCCAGAAGGGTTGCCATTGGCTGTTACTCTGAATTTGGCTTATTCCATGAAGAAAATGATGAGGGATAATGCCATGGTTCGGAGAATCTCTGCTTGTGAGACAATGGGGTCTGCTACAACAATCTGCACTGATAAAACAGGTACACTTACGTTGAATGAGATGAAGGTGACAGAGGTTTGGGTGGGGAAAAAGGAAATAGGAGGAGAAGATCGTTATTTGGCGCCAAGTTTAGTTCAATTATTGAAACAAGGGATTGGGTTGAATACCACTGCAAGTGTTTATCAGCCGCAACAAACCTCGCTGCCTGAAATTTCGGGCAGTCCTACTGAGAAAGCGTTGCTTTCTTGGGCGGTGGTGGATTTGGGGATGGACAATATTGATGAAGTGAAGCAGAATTGTGAGATAATTCATGTGGAGACGTTCAACTCTGCGAAAAAGAGAAGCGGGATTCTGATGAGGGAGAAGAGAGGGAATATGAATATGAATATTCATACACACTGGAAGGGAGCTGCTGAGATGATATTGGCTATGTGTTCAAATTATTATGACCATACAGGTGAAGTCATTGTCATGGATGATGGAGAAAGGGTTCAGATTGAGAACATTGTCAAGGGCATGGCAACCAAAAGTTTGAGATGCATTGCCTTTGCTCAAAAGAGCTGTGAAAAGCTTGAAGAGACGGGACTAACGTTGTTGGGGATACTTGGGTTGAAAGACCCTTGTAGGCCAGGAGTTGAAGCAGCAGTTGATTCCTGCAAGAATGCTGGAGTGAAGATCAAGATGATCACAGGAGATAATGTGCACACAGCAAGGGCCATAGCCTCTGAATGTGGGATTCTTTACCCTAATAATGATGAATTGGATGAAGAGGCAGTGGTTGAAGGGTTTCAATTCAGAAACTTCTCACACGAGGAGAGAATGGATAAGATTGACAGAATCAGAGTCATGGCTAGATCGTCTCCATTTGACAAGCTTCTGATGGTTCAATGCTTAAAGCAGAAGGGTCATGTGGTGGCAGTCACAGGTGATGGCACAAATGATGCACCTGCTCTCAAGGAAGCAGATATTGGACTTTCCATGGGAATACAAGGAACTGAAGTGGCAAAGGAGAGTTCAGATATTGTTATACTTGACGACAATTTCTCTTCTGTGGTTACCGTACTAAGGTGGGGAAGATGTGTGTACACAAACATACAAAAGTTCATTCAGTTTCAGCTCACGGTTAACGTTGCTGCACTTGTCATCAACTTTGTAGCTGCTGTTTCTTCTGGCAAAGTGCCTCTTTCAGCTGTCCAGCTTTTGTGGGTAAACCTGATAATGGACACTCTTGGAGCTTTGGCCTTGGCCACCGAGGAACCCACTAATGATCTCTTGAAGATGCCACCTGTAGGAAGAGTTGAGCCACTTATAACTAGAGTTATGTGGAGGAACCTCATTTCACAGGCATTGTATCAAGTGCTTGTCTTGCTGATCTTACAATTCAAGGGAAGATCAATCTTTGACGTCAGTGAGAAGGTGAAGAACACCCTTATTTTCAATGCCTTTGTCCTCTGCCAAGTCTTCAATGAGTTCAATGCAAGGAAGCTGGAGAAGAAGAACATCTTTGAGGGGCTTGGTAAAAATAAGTTGTTCGTGGCAATTGTGGGCCTAACTGTAATTCTTCAACTAGTGATGGTTGAGTTTTTGAAGAAGTTTGCCAATACTGAGAGGTTGACTTGGGAGCAATGGGGTGTTTGTGTTGGCATTGGAGCTTTGTCTTGGCCAATTGGTTTGCTGGTGAAGTGTATCTCAGTTGGTCCCAACAAGTAG
Predicted protein sequences of Glyma.08g045000
>Glyma.08g045000.1.p sequence-type=predicted peptide transcript=Glyma.08g045000.1 locus=Glyma.08g045000 ID=Glyma.08g045000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVRPYAAYPMTCKKRWRMALNAISFVKTLHHLSNKAFHINTPTQLLRSFSYLSIGVAPEEPSFNNVDPKLLSDMVREKSSESLTQLGGVKELAKLLETDVKRGIRDIDNRKRVFGENTFTKPPSKGFLSFVLESFKDPTIIILLVCAVLSLGFGIKQHGWKDGWYDGGSIILAVVLVIVVSSVSNFNQSRQFQKLSAKSDNLGVEVVRGGRRQRVSIFEVVVGDVAYLKIGDQVPADGVFLEGHSLKVDESSMTGESDHVHVNGDTNPFLLSGTKVTDGFAHMLVTCVGMNTAWGAMMGSITREVNEETPLQVRLNKLTSAIGKVGLFVAAIVLVVSMIRYLTGSTRDDFGIREFVRGKTKSEDVMNAVVGIVAAAVTIVVVAIPEGLPLAVTLNLAYSMKKMMRDNAMVRRISACETMGSATTICTDKTGTLTLNEMKVTEVWVGKKEIGGEDRYLAPSLVQLLKQGIGLNTTASVYQPQQTSLPEISGSPTEKALLSWAVVDLGMDNIDEVKQNCEIIHVETFNSAKKRSGILMREKRGNMNMNIHTHWKGAAEMILAMCSNYYDHTGEVIVMDDGERVQIENIVKGMATKSLRCIAFAQKSCEKLEETGLTLLGILGLKDPCRPGVEAAVDSCKNAGVKIKMITGDNVHTARAIASECGILYPNNDELDEEAVVEGFQFRNFSHEERMDKIDRIRVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFSSVVTVLRWGRCVYTNIQKFIQFQLTVNVAALVINFVAAVSSGKVPLSAVQLLWVNLIMDTLGALALATEEPTNDLLKMPPVGRVEPLITRVMWRNLISQALYQVLVLLILQFKGRSIFDVSEKVKNTLIFNAFVLCQVFNEFNARKLEKKNIFEGLGKNKLFVAIVGLTVILQLVMVEFLKKFANTERLTWEQWGVCVGIGALSWPIGLLVKCISVGPNK*






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