SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G70730.1 | AT | Phosphoglucomutase/phosphomannomutase family protein | JGI | N/A | IEA |
| GO:0005975 | GO-bp | carbohydrate metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005975 | GO-bp | carbohydrate metabolic process | JGI | N/A | IEA |
| GO:0005978 | GO-bp | glycogen biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0006006 | GO-bp | glucose metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0009590 | GO-bp | detection of gravity | EnsemblGenomes | N/A | IEA |
| GO:0019252 | GO-bp | starch biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0019388 | GO-bp | galactose catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0071704 | GO-bp | organic substance metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0009570 | GO-cc | chloroplast stroma | EnsemblGenomes | N/A | IEA |
| GO:0010319 | GO-cc | stromule | EnsemblGenomes | N/A | IEA |
| GO:0000287 | GO-mf | magnesium ion binding | EnsemblGenomes | N/A | IEA |
| GO:0004614 | GO-mf | phosphoglucomutase activity | EnsemblGenomes | N/A | IEA |
| GO:0016868 | GO-mf | intramolecular transferase activity, phosphotransferases | EnsemblGenomes | N/A | IEA |
| GO:0016868 | GO-mf | intramolecular transferase activity, phosphotransferases | JGI | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| KOG0625 | KOG | Phosphoglucomutase | JGI | N/A | IEA |
| PTHR22573 | Panther | PHOSPHOHEXOMUTASE FAMILY MEMBER | JGI | N/A | IEA |
| PTHR22573:SF5 | Panther | JGI | N/A | IEA | |
| PF00408 | PFAM | Phosphoglucomutase/phosphomannomutase, C-terminal domain | JGI | N/A | IEA |
| PF02878 | PFAM | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I | JGI | N/A | IEA |
| PF02879 | PFAM | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II | JGI | N/A | IEA |
| PF02880 | PFAM | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III | JGI | N/A | IEA |
| GLUCOSE1PMETAB-PWY | SoyCyc9 | glucose and glucose-1-phosphate degradation | Plant Metabolic Network | ISS | |
| PWY-3801 | SoyCyc9 | sucrose degradation II (sucrose synthase) | Plant Metabolic Network | ISS | |
| PWY-5661 | SoyCyc9 | GDP-glucose biosynthesis | Plant Metabolic Network | ISS | |
| PWY-622 | SoyCyc9 | starch biosynthesis | Plant Metabolic Network | ISS | |
| PWY-6317 | SoyCyc9 | D-galactose degradation I (Leloir pathway) | Plant Metabolic Network | ISS | |
| PWY-7238 | SoyCyc9 | sucrose biosynthesis II | Plant Metabolic Network | ISS | |
| PWY-7343 | SoyCyc9 | UDP-α-D-glucose biosynthesis I | Plant Metabolic Network | ISS | |
| PWY-7345 | SoyCyc9 | superpathway of anaerobic sucrose degradation | Plant Metabolic Network | ISS | |
| PWYQT-4466 | SoyCyc9 | superpathway of sucrose and starch metabolism I (non-photosynthetic tissue) | Plant Metabolic Network | ISS | |
| SUCSYN-PWY | SoyCyc9 | sucrose biosynthesis I (from photosynthesis) | Plant Metabolic Network | ISS | |
| GN7V-55052 | SoyCyc9-rxn | phosphoglucomutase (glucose-cofactor) | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| PGM2 | phosphoglucomutase 2 gene | |
| PGMb | beta-phosphoglucomutase-like |
|
Glyma.08g044100 not represented in the dataset |
Glyma.08g044100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.05g237000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma08g04890 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.08g044100.1 sequence-type=CDS polypeptide=Glyma.08g044100.1.p locus=Glyma.08g044100 ID=Glyma.08g044100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTGCTCTTCAATGTTTCACGCGTTGAGACCACTCCCTTCGATGGACAGAAGCCTGGAACCTCTGGTCTCCGCAAGAAGGTGAAAGTATTCGTGCAACCTCATTACCTCCATAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAGGTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTATTCAGATTATAACTAAAATGTCAGCAGCAAATGGAGTAAGACGTGTTTGGATTGGTCAAAATGGATTACTTTCCACTCCTGCAGTATCTGCTGTTATACGTGAAAAACTTGGAGCTGATGGATCCAGGGCAACAGGTGCATTTATACTGACAGCAAGTCACAATCCCGGTGGCCCTAATGAGGATTTTGGGATTAAATATAATATGGAAAACGGTGGACCTGCACCAGAGGGAATTACTGACAAGATATATGAAAACACAACAACAATTAATGAGTACTTGATTGCTTCAGATCTGCCAGATGTGGATATTACCTCAACAGGTGTTACAAGCTTTACAGGCCCCGGAGGACCATTTGATGTTGAGGTTTTTGATTCAGCAAGTGATTATATAAAATTGATGAAGTCAATTTTTGATTTTGAATCTATCAGGAAACTGCTGTCATCTCCTAAATTCACATTCTGTTATGATGCACTACATGGGGTTGGTGGAGCATATGCAAAGAGTATTTTTGTGGATGAGCTTGGAGCACAAGAAAGCTCTTTACTGAACTGTACACCAAAGGAAGACTTCGGAGGAGGACACCCAGACCCCAATTTGACATATGCAAAAGAGTTGGTTGCTCGTATGGGATTGGGCAAATCCGAACCCCAAGAAGAGCCCCCAGAGTTTGGTGCTGCTTCTGATGGTGATGCAGATCGCAACATGGTTCTTGGTAAAAGGTTTTTTGTCACTCCTTCAGATTCCGTGGCCATTATCGCTGCAAATGCTGTTGAAGCTATACCATACTTTTCTGCTGGTTTAAAGGGTGTTGCCAGGAGCATGCCAACCTCTGCTGCCCTGGATGTTGTTGCCAAACATCTGAATTTGAAATTTTTTGAGGTCCCCACGGGTTGGAAGTTCTTTGGTAATTTAATGGATGCTGGATTATGTTCAGTCTGTGGTGAAGAAAGTTTTGGGACTGGTTCTGACCATATTCGTGAGAAAGATGGAATCTGGGCAGTTTTGGCCTGGCTATCTATACTTGCATATAAAAATAAAGATAAACTTGAAGACAAGCTTGTCACTGTTGAAGACATAGTTCGCCAGCATTGGGCTACTTATGGGCGCCATTATTATACTCGATATGACTATGAAAACGTGGATGCAGGTGCAGCAAAGGAACTGATGGCATATTTGGTCAAGCTGCAGTCCTCACTTTCAGAAGTCAATCAGATTGTTAAGGGGATAAGGTCAGATGTTTCGAATGTTGTCCACGGTGATGAATTTGAGTACAATGATCCTGTGGATGGTTCCATCTCATCACATCAGGGAATCCGATATTTGTTTGAGGATGGATCACGATTGATTTTCCGCCTATCTGGAACTGGATCAGAAGGTGCAACAATTCGATTATACATTGAGCAATATGAGAAGGATCCATCAAAGATTGGGAGACTTTCAAACGAAGCACTTGCTCCTCTTGTGGAAGTTGCGTTGAAACTTTCGAAGATGGAAGAATTCACTGGTCGATCCGCTCCAACAGTCATTACATGA
>Glyma.08g044100.1.p sequence-type=predicted peptide transcript=Glyma.08g044100.1 locus=Glyma.08g044100 ID=Glyma.08g044100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVLFNVSRVETTPFDGQKPGTSGLRKKVKVFVQPHYLHNFVQSTFNALTVEKVRGATLVVSGDGRYFSKEAIQIITKMSAANGVRRVWIGQNGLLSTPAVSAVIREKLGADGSRATGAFILTASHNPGGPNEDFGIKYNMENGGPAPEGITDKIYENTTTINEYLIASDLPDVDITSTGVTSFTGPGGPFDVEVFDSASDYIKLMKSIFDFESIRKLLSSPKFTFCYDALHGVGGAYAKSIFVDELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSEPQEEPPEFGAASDGDADRNMVLGKRFFVTPSDSVAIIAANAVEAIPYFSAGLKGVARSMPTSAALDVVAKHLNLKFFEVPTGWKFFGNLMDAGLCSVCGEESFGTGSDHIREKDGIWAVLAWLSILAYKNKDKLEDKLVTVEDIVRQHWATYGRHYYTRYDYENVDAGAAKELMAYLVKLQSSLSEVNQIVKGIRSDVSNVVHGDEFEYNDPVDGSISSHQGIRYLFEDGSRLIFRLSGTGSEGATIRLYIEQYEKDPSKIGRLSNEALAPLVEVALKLSKMEEFTGRSAPTVIT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
