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Report for Sequence Feature Glyma.08g041600

Feature Type:gene_model
Chromosome:Gm08
Start:3297002
stop:3300467
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g041600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G73840.1AT hydroxyproline-rich glycoprotein family protein JGI N/AIEA
GO:0031124GO-bp mRNA 3'-end processing EnsemblGenomesN/AIEA
GO:0098789GO-bp pre-mRNA cleavage required for polyadenylation EnsemblGenomesN/AIEA
GO:0005847GO-cc mRNA cleavage and polyadenylation specificity factor complex EnsemblGenomesN/AIEA
GO:0003729GO-mf mRNA binding EnsemblGenomesN/AIEA
PTHR23139Panther RNA-BINDING PROTEIN JGI N/AIEA
PTHR23139:SF13Panther JGI N/AIEA

Expression Patterns of Glyma.08g041600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g041600
ParalogEvidenceComments
Glyma.05g234300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g041600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g04620 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g041600
>Glyma.08g041600.2 sequence-type=transcript locus=Glyma.08g041600 ID=Glyma.08g041600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTGCATTGAATCTCCTTCATAATCATAGAACGAACAACATCCGTTTCTGGCTTTGCGGGTTGAGCAATGGCCGGAAAACAGGTCGGCGAGGGTTTACCGGCGAACCTCGCTGGAATGTCAAAGAATCAGCTCTACGATATCATGTCTCAGATGAAGGTACTTACAATACTTCTTCTTTTTCACTCTTCACGAAGAACAACACGCTAACCATTTCGTTTGTTGTCCCTCAGAATCTGATCGAACAGAACCAGCAACAGGCCAGGCAGATCCTCATCCAAAATCCTATGTTAACCAAAGCGCTTTTCCAGGCACAAATTATGCTTGGAATGGTGCAAGCACCTCAAGTGGTTCCAAAAGTTCAGCCAATGGTTTCACAGAACAATCAGCAGCCAGTACAACCAACACAACAGCCAAATATTCAGCCTGCTCCATTATTGCCTGGGCATGGTGGTGCACAGGATCAAGCAGGTGTATCTCAAACCCAAATTCCTCTGAGGAAACACCAGAACCAACCTTCAGTGCCAGTTTCATCTGCTGTTCCTGCAGCGAGGCATCAATCTCAGCCCATGGCTGCACATTCCTTGCCAATGCCACAACATCCTAAAGGACATCCAACTCCCCAAATGGCTCTAGTGTCTCTTCCACAATCATCACAACTTCCAAACATACCTCCACCTTCTCTTCAATCATCATCACAGCCTCTTCATCCAACTCAAATGGCAACTGCTTCCAGTCAGTTACAGCAACCAATGCAGACATCGGGGTTTCCACCTCTGCAACCACCGCTGCCACCGCAGATCAGACCAACTGCATTGCCAACCTTCCATCCCCAGTATCCCCCACAAATGGGTGCAAACATGGGTTTCCAACATGCTGGTGCTTCTCACAATCTTCCGCAATCGATGTTTCATCCTGGTACAAAACCTTCTGCTAGTGTTGGGTCCACATTCCCACAGGGGCAGACACCACTTCCAGGTCAACCATCATCTCAGCCACCTTATCAGGTTGGGAATATGCCTTTAGGGCCTGATTTTGGCAACCAAGCTGGAAATGCTATGCAAGTAGACAGAGGGTCTTCTTGGATGCTTGGTCCCTCAGAAAACCTAGCACATCTATCTGGTCCTCCTGGACCACCATCTGTAGTTTCTGGTCAGATGGGTGCTGCTGCTAAGCAGCCTCTTCGGCCTCCTGGGTTGACACCGGAGATGGAGAAGGCACTGCTTCAGCAGGTCATGAGCCTCACACCAGAGCAGATAAATCTCCTGCCTCCAGAACAAAGAAATCAAGTGCTGCAGCTACAACAGATGTTGCGTCAATGATGTAATACGCATACACACCATGAAAGTTAGGCAATCTTTAATCCTTCCAGTTTGGCAGAGGTTATTATGTCGTTttttttttatcggcaaatattagtttgttagttttgtaggaatatggtggtaagaatttgaacctgcaacctctccctccccccttaagcccctttttaaccattaagccaaccttatatctcctAAAGGTTATTATGTCGTATATATTCAAACTGGTTGGCTGCCAAGTTTTGTAGAAATTAAATTAATACAAATTCATGTAACAAATTATAGAGCATATTATTCGTTTCTTCTGGAATTTGGCACGAGTGTATCTTTTCCGTTAGTTTTGTACGATGAAAGAGTAAATTGAGTTATAGTTCATATATGAT
Coding sequences of Glyma.08g041600
>Glyma.08g041600.1 sequence-type=CDS polypeptide=Glyma.08g041600.1.p locus=Glyma.08g041600 ID=Glyma.08g041600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGGAAAACAGGTCGGCGAGGGTTTACCGGCGAACCTCGCTGGAATGTCAAAGAATCAGCTCTACGATATCATGTCTCAGATGAAGAATCTGATCGAACAGAACCAGCAACAGGCCAGGCAGATCCTCATCCAAAATCCTATGTTAACCAAAGCGCTTTTCCAGGCACAAATTATGCTTGGAATGGTGCAAGCACCTCAAGTGGTTCCAAAAGTTCAGCCAATGGTTTCACAGAACAATCAGCAGCCAGTACAACCAACACAACAGCCAAATATTCAGCCTGCTCCATTATTGCCTGGGCATGGTGGTGCACAGGATCAAGCAGGTGTATCTCAAACCCAAATTCCTCTGAGGAAACACCAGAACCAACCTTCAGTGCCAGTTTCATCTGCTGTTCCTGCAGCGAGGCATCAATCTCAGCCCATGGCTGCACATTCCTTGCCAATGCCACAACATCCTAAAGGACATCCAACTCCCCAAATGGCTCTAGTGTCTCTTCCACAATCATCACAACTTCCAAACATACCTCCACCTTCTCTTCAATCATCATCACAGCCTCTTCATCCAACTCAAATGGCAACTGCTTCCAGTCAGTTACAGCAACCAATGCAGACATCGGGGTTTCCACCTCTGCAACCACCGCTGCCACCGCAGATCAGACCAACTGCATTGCCAACCTTCCATCCCCAGTATCCCCCACAAATGGGTGCAAACATGGGTTTCCAACATGCTGGTGCTTCTCACAATCTTCCGCAATCGATGTTTCATCCTGGTACAAAACCTTCTGCTAGTGTTGGGTCCACATTCCCACAGGGGCAGACACCACTTCCAGGTCAACCATCATCTCAGCCACCTTATCAGGTTGGGAATATGCCTTTAGGGCCTGATTTTGGCAACCAAGCTGGAAATGCTATGCAAGTAGACAGAGGGTCTTCTTGGATGCTTGGTCCCTCAGAAAACCTAGCACATCTATCTGGTCCTCCTGGACCACCATCTGTAGTTTCTGGTCAGATGGGTGCTGCTGCTAAGCAGCCTCTTCGGCCTCCTGGGTTGACACCGGAGATGGAGAAGGCACTGCTTCAGCAGGTCATGAGCCTCACACCAGAGCAGATAAATCTCCTGCCTCCAGAACAAAGAAATCAAGTGCTGCAGCTACAACAGATGTTGCGTCAATGA

>Glyma.08g041600.2 sequence-type=CDS polypeptide=Glyma.08g041600.2.p locus=Glyma.08g041600 ID=Glyma.08g041600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTAACCAAAGCGCTTTTCCAGGCACAAATTATGCTTGGAATGGTGCAAGCACCTCAAGTGGTTCCAAAAGTTCAGCCAATGGTTTCACAGAACAATCAGCAGCCAGTACAACCAACACAACAGCCAAATATTCAGCCTGCTCCATTATTGCCTGGGCATGGTGGTGCACAGGATCAAGCAGGTGTATCTCAAACCCAAATTCCTCTGAGGAAACACCAGAACCAACCTTCAGTGCCAGTTTCATCTGCTGTTCCTGCAGCGAGGCATCAATCTCAGCCCATGGCTGCACATTCCTTGCCAATGCCACAACATCCTAAAGGACATCCAACTCCCCAAATGGCTCTAGTGTCTCTTCCACAATCATCACAACTTCCAAACATACCTCCACCTTCTCTTCAATCATCATCACAGCCTCTTCATCCAACTCAAATGGCAACTGCTTCCAGTCAGTTACAGCAACCAATGCAGACATCGGGGTTTCCACCTCTGCAACCACCGCTGCCACCGCAGATCAGACCAACTGCATTGCCAACCTTCCATCCCCAGTATCCCCCACAAATGGGTGCAAACATGGGTTTCCAACATGCTGGTGCTTCTCACAATCTTCCGCAATCGATGTTTCATCCTGGTACAAAACCTTCTGCTAGTGTTGGGTCCACATTCCCACAGGGGCAGACACCACTTCCAGGTCAACCATCATCTCAGCCACCTTATCAGGTTGGGAATATGCCTTTAGGGCCTGATTTTGGCAACCAAGCTGGAAATGCTATGCAAGTAGACAGAGGGTCTTCTTGGATGCTTGGTCCCTCAGAAAACCTAGCACATCTATCTGGTCCTCCTGGACCACCATCTGTAGTTTCTGGTCAGATGGGTGCTGCTGCTAAGCAGCCTCTTCGGCCTCCTGGGTTGACACCGGAGATGGAGAAGGCACTGCTTCAGCAGGTCATGAGCCTCACACCAGAGCAGATAAATCTCCTGCCTCCAGAACAAAGAAATCAAGTGCTGCAGCTACAACAGATGTTGCGTCAATGA
Predicted protein sequences of Glyma.08g041600
>Glyma.08g041600.1.p sequence-type=predicted peptide transcript=Glyma.08g041600.1 locus=Glyma.08g041600 ID=Glyma.08g041600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAGKQVGEGLPANLAGMSKNQLYDIMSQMKNLIEQNQQQARQILIQNPMLTKALFQAQIMLGMVQAPQVVPKVQPMVSQNNQQPVQPTQQPNIQPAPLLPGHGGAQDQAGVSQTQIPLRKHQNQPSVPVSSAVPAARHQSQPMAAHSLPMPQHPKGHPTPQMALVSLPQSSQLPNIPPPSLQSSSQPLHPTQMATASSQLQQPMQTSGFPPLQPPLPPQIRPTALPTFHPQYPPQMGANMGFQHAGASHNLPQSMFHPGTKPSASVGSTFPQGQTPLPGQPSSQPPYQVGNMPLGPDFGNQAGNAMQVDRGSSWMLGPSENLAHLSGPPGPPSVVSGQMGAAAKQPLRPPGLTPEMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQQMLRQ*

>Glyma.08g041600.2.p sequence-type=predicted peptide transcript=Glyma.08g041600.2 locus=Glyma.08g041600 ID=Glyma.08g041600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLTKALFQAQIMLGMVQAPQVVPKVQPMVSQNNQQPVQPTQQPNIQPAPLLPGHGGAQDQAGVSQTQIPLRKHQNQPSVPVSSAVPAARHQSQPMAAHSLPMPQHPKGHPTPQMALVSLPQSSQLPNIPPPSLQSSSQPLHPTQMATASSQLQQPMQTSGFPPLQPPLPPQIRPTALPTFHPQYPPQMGANMGFQHAGASHNLPQSMFHPGTKPSASVGSTFPQGQTPLPGQPSSQPPYQVGNMPLGPDFGNQAGNAMQVDRGSSWMLGPSENLAHLSGPPGPPSVVSGQMGAAAKQPLRPPGLTPEMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQQMLRQ*






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