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Report for Sequence Feature Glyma.08g038600

Feature Type:gene_model
Chromosome:Gm08
Start:3029349
stop:3032467
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.08g038600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G13260.1AT Flavin-binding monooxygenase family protein JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0004497GO-mf monooxygenase activity EnsemblGenomesN/AIEA
GO:0004499GO-mf N,N-dimethylaniline monooxygenase activity EnsemblGenomesN/AIEA
GO:0004499GO-mf N,N-dimethylaniline monooxygenase activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0050660GO-mf flavin adenine dinucleotide binding EnsemblGenomesN/AIEA
GO:0050660GO-mf flavin adenine dinucleotide binding JGI N/AIEA
GO:0050661GO-mf NADP binding EnsemblGenomesN/AIEA
GO:0050661GO-mf NADP binding JGI N/AIEA
KOG1399 KOG Flavin-containing monooxygenase JGI N/AIEA
PTHR23023Panther DIMETHYLANILINE MONOOXYGENASE JGI N/AIEA
PTHR23023:SF5Panther JGI N/AIEA
PF00743PFAM Flavin-binding monooxygenase-like JGI N/AIEA
PWYDQC-4SoyCyc9 indole-3-acetate biosynthesis I Plant Metabolic Network ISS
GN7V-42828SoyCyc9-rxn indole-3-pyruvate monooxygenase Plant Metabolic Network ISS

Proteins Associated with Glyma.08g038600
LocusGene SymbolProtein Name
YUC2A indole-3-pyruvate monooxygenase YUCCA2

Expression Patterns of Glyma.08g038600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.08g038600
ParalogEvidenceComments
Glyma.05g231100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g038600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma08g04310 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.08g038600
>Glyma.08g038600.2 sequence-type=transcript locus=Glyma.08g038600 ID=Glyma.08g038600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAATCCCTTTAACTTGCTGTCTATTAGTTTCTGTTTATGCCCTGAGACTTTGTTGCTTCCTGCTTTCTCATCCATTCAACAAAACCAAACTTCTTGTCAGCCTTGGCTTATTGAAGCAAATCATACCCTTACATACCATTTTGATTTGATCTTCAGATCAATCAGACCATACTGTATCTCATCTGTTTCAACTTCACTCAAAGTACTATCATGGTTTTATTTTACGCAAAGTTTTAAAAAGCATTCCGCCACCGAAATTTTGGCCACAATATCAAGGTTTCTGGGGGTCTGTGTGACCACAACTTGACCATAATTGTGGTTGCATTTATTCACTATATCAAGGATGGTCATGAAACCACTACTGTGATTGCAATTTAAAATCTTGATTTAATGGTTTCACTTTGTCATGACCTTGTGCACCTCTTGAAGCTTTTTATTCAGGCTTGAAATTCTTGAAATTATAACTCCTTCCCCCTTTGATGCTTAACATGGAGTACTTGAAGGAAGTGGAAGGAAAAAGTGTCCATGATTATGTTGAGGTAAAGATGGGTAAAATGACAAAGCCAATAAGTGTGGCAGGACCAGTGATAGTGGGTGCTGGTCCATCAGGGCTTGCTGCAGCAGCATGTCTTAAACAGAAAGGCATTCCAAGCTTAATCCTTGAAAGAGCTGATTGCTTAGCTTCAATGTGGCAGCTCAAGACTTATGACCGCCTGTGCCTTCATCTCCCTAAGCAATTCTGCCAACTCCCTCTAATGCCATTCCCACAAAACTTTCCCTCTTATCCAACCAAACAACAATTCTTGGCCTATCTCAAAGCCTATGCTGACCATTTTGATATAAAACCAGCTTTAAGCAAGACAGTGATCAGTGCCAATTTTGATCATGGATGTGGGTACTGGAGGGTGAAGACTCAAGGTTTGAAAAAGGAGGAGACAGAATATGTTTGTCAGTGGCTGATAGTAGCCACTGGAGAGAATGCTGAAGAGGTTGTGCCTCAAATTGAAGGAATGAGTGAGTTTGAAGGGCCTATCTTACACACCAGCTCATATAAAAGTGGTAGTATGTTTGGTGGGAAGAATGTTTTGGTTGTTGGATGTGGGAATTCAGGTATGGAAGTTTGCTTAGATTTATGCAACCATGATGCTCGCCCATCCCTTGTGGTTAGAGATACGGTGCATATCTTGCCTCAGCAGATGTTTGGGAAATCAACGTTTGGTTTATCTATGAGCTTGCTCAAGTGGTTCCCCATGCGTCTCGTGGACAAATTTTTACTTCTGATGTCACATCTCATTCTCGGGGACACAGCTCAATTTGGACTTAATCGTCCCAAAATTGGCCCTCTAGAGCTCAAGAACTTGTGCGGCAAGACCCCAGTTTTGGATGTAGGCACACTTGCTCACATAAAAAGTGGAAAAATTAAGGGCAGCAACATGTTTTGTGAGAAGGATGGATTGCCCAGGAAAGATTTCCCAAATGGATGGAAAGGTGAAAATGGACTCTATGCCGTGGGTTTCTCTAAACGTGGCCTTCTTGGTGCATCTATTCATTCAAAGAGGACGGCAGAAGATATTGAACACTGTTGGAAAGCTGCTAATACCACGCGTGTGTAGGACTTGATGCGTTTTAGGATATACAACGGAATCTTTTGTGCTTGAATTAAGCAACGGAATCTTTTGTGCTTGAATTAAGCAGTAATTATATTTAGATCACGTTTCATTCAAACATTACACTTTTTTTTTTCAGAGAATATAAATATACTACAACTCAT
Coding sequences of Glyma.08g038600
>Glyma.08g038600.1 sequence-type=CDS polypeptide=Glyma.08g038600.1.p locus=Glyma.08g038600 ID=Glyma.08g038600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTTAACATGGAGTACTTGAAGGAAGTGGAAGGAAAAAGTGTCCATGATTATGTTGAGGTAAAGATGGGTAAAATGACAAAGCCAATAAGTGTGGCAGGACCAGTGATAGTGGGTGCTGGTCCATCAGGGCTTGCTGCAGCAGCATGTCTTAAACAGAAAGGCATTCCAAGCTTAATCCTTGAAAGAGCTGATTGCTTAGCTTCAATGTGGCAGCTCAAGACTTATGACCGCCTGTGCCTTCATCTCCCTAAGCAATTCTGCCAACTCCCTCTAATGCCATTCCCACAAAACTTTCCCTCTTATCCAACCAAACAACAATTCTTGGCCTATCTCAAAGCCTATGCTGACCATTTTGATATAAAACCAGCTTTAAGCAAGACAGTGATCAGTGCCAATTTTGATCATGGATGTGGGTACTGGAGGGTGAAGACTCAAGGTTTGAAAAAGGAGGAGACAGAATATGTTTGTCAGTGGCTGATAGTAGCCACTGGAGAGAATGCTGAAGAGGTTGTGCCTCAAATTGAAGGAATGAGTGAGTTTGAAGGGCCTATCTTACACACCAGCTCATATAAAAGTGGTAGTATGTTTGGTGGGAAGAATGTTTTGGTTGTTGGATGTGGGAATTCAGGTATGGAAGTTTGCTTAGATTTATGCAACCATGATGCTCGCCCATCCCTTGTGGTTAGAGATACGGTGCATATCTTGCCTCAGCAGATGTTTGGGAAATCAACGTTTGGTTTATCTATGAGCTTGCTCAAGTGGTTCCCCATGCGTCTCGTGGACAAATTTTTACTTCTGATGTCACATCTCATTCTCGGGGACACAGCTCAATTTGGACTTAATCGTCCCAAAATTGGCCCTCTAGAGCTCAAGAACTTGTGCGGCAAGACCCCAGTTTTGGATGTAGGCACACTTGCTCACATAAAAAGTGGAAAAATTAAGGTTTGCCGCGGAATTAAACAACTAGCAAAGCATAAGGTGGAATTTGTAGATGGAAAAACAGAGAATTTCGATGTCATCATTATGGCAACTGGTTACAAAAGCAATGTACCCACTTGGTTGAAGGGCAGCAACATGTTTTGTGAGAAGGATGGATTGCCCAGGAAAGATTTCCCAAATGGATGGAAAGGTGAAAATGGACTCTATGCCGTGGGTTTCTCTAAACGTGGCCTTCTTGGTGCATCTATTCATTCAAAGAGGACGGCAGAAGATATTGAACACTGTTGGAAAGCTGCTAATACCACGCGTGTGTAG

>Glyma.08g038600.2 sequence-type=CDS polypeptide=Glyma.08g038600.2.p locus=Glyma.08g038600 ID=Glyma.08g038600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTTAACATGGAGTACTTGAAGGAAGTGGAAGGAAAAAGTGTCCATGATTATGTTGAGGTAAAGATGGGTAAAATGACAAAGCCAATAAGTGTGGCAGGACCAGTGATAGTGGGTGCTGGTCCATCAGGGCTTGCTGCAGCAGCATGTCTTAAACAGAAAGGCATTCCAAGCTTAATCCTTGAAAGAGCTGATTGCTTAGCTTCAATGTGGCAGCTCAAGACTTATGACCGCCTGTGCCTTCATCTCCCTAAGCAATTCTGCCAACTCCCTCTAATGCCATTCCCACAAAACTTTCCCTCTTATCCAACCAAACAACAATTCTTGGCCTATCTCAAAGCCTATGCTGACCATTTTGATATAAAACCAGCTTTAAGCAAGACAGTGATCAGTGCCAATTTTGATCATGGATGTGGGTACTGGAGGGTGAAGACTCAAGGTTTGAAAAAGGAGGAGACAGAATATGTTTGTCAGTGGCTGATAGTAGCCACTGGAGAGAATGCTGAAGAGGTTGTGCCTCAAATTGAAGGAATGAGTGAGTTTGAAGGGCCTATCTTACACACCAGCTCATATAAAAGTGGTAGTATGTTTGGTGGGAAGAATGTTTTGGTTGTTGGATGTGGGAATTCAGGTATGGAAGTTTGCTTAGATTTATGCAACCATGATGCTCGCCCATCCCTTGTGGTTAGAGATACGGTGCATATCTTGCCTCAGCAGATGTTTGGGAAATCAACGTTTGGTTTATCTATGAGCTTGCTCAAGTGGTTCCCCATGCGTCTCGTGGACAAATTTTTACTTCTGATGTCACATCTCATTCTCGGGGACACAGCTCAATTTGGACTTAATCGTCCCAAAATTGGCCCTCTAGAGCTCAAGAACTTGTGCGGCAAGACCCCAGTTTTGGATGTAGGCACACTTGCTCACATAAAAAGTGGAAAAATTAAGGGCAGCAACATGTTTTGTGAGAAGGATGGATTGCCCAGGAAAGATTTCCCAAATGGATGGAAAGGTGAAAATGGACTCTATGCCGTGGGTTTCTCTAAACGTGGCCTTCTTGGTGCATCTATTCATTCAAAGAGGACGGCAGAAGATATTGAACACTGTTGGAAAGCTGCTAATACCACGCGTGTGTAG
Predicted protein sequences of Glyma.08g038600
>Glyma.08g038600.1.p sequence-type=predicted peptide transcript=Glyma.08g038600.1 locus=Glyma.08g038600 ID=Glyma.08g038600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLNMEYLKEVEGKSVHDYVEVKMGKMTKPISVAGPVIVGAGPSGLAAAACLKQKGIPSLILERADCLASMWQLKTYDRLCLHLPKQFCQLPLMPFPQNFPSYPTKQQFLAYLKAYADHFDIKPALSKTVISANFDHGCGYWRVKTQGLKKEETEYVCQWLIVATGENAEEVVPQIEGMSEFEGPILHTSSYKSGSMFGGKNVLVVGCGNSGMEVCLDLCNHDARPSLVVRDTVHILPQQMFGKSTFGLSMSLLKWFPMRLVDKFLLLMSHLILGDTAQFGLNRPKIGPLELKNLCGKTPVLDVGTLAHIKSGKIKVCRGIKQLAKHKVEFVDGKTENFDVIIMATGYKSNVPTWLKGSNMFCEKDGLPRKDFPNGWKGENGLYAVGFSKRGLLGASIHSKRTAEDIEHCWKAANTTRV*

>Glyma.08g038600.2.p sequence-type=predicted peptide transcript=Glyma.08g038600.2 locus=Glyma.08g038600 ID=Glyma.08g038600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLNMEYLKEVEGKSVHDYVEVKMGKMTKPISVAGPVIVGAGPSGLAAAACLKQKGIPSLILERADCLASMWQLKTYDRLCLHLPKQFCQLPLMPFPQNFPSYPTKQQFLAYLKAYADHFDIKPALSKTVISANFDHGCGYWRVKTQGLKKEETEYVCQWLIVATGENAEEVVPQIEGMSEFEGPILHTSSYKSGSMFGGKNVLVVGCGNSGMEVCLDLCNHDARPSLVVRDTVHILPQQMFGKSTFGLSMSLLKWFPMRLVDKFLLLMSHLILGDTAQFGLNRPKIGPLELKNLCGKTPVLDVGTLAHIKSGKIKGSNMFCEKDGLPRKDFPNGWKGENGLYAVGFSKRGLLGASIHSKRTAEDIEHCWKAANTTRV*






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