Glyma.08g034300

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Report for Sequence Feature Glyma.08g034300

Feature Type:	gene_model
Chromosome:	Gm08
Start:	2721922
stop:	2726880
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.08g034300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79750.1	AT	NADP-malic enzyme 4	JGI	N/A	IEA
AT5G25880.1	AT	NADP-malic enzyme 3	JGI	N/A	IEA
GO:0006090	GO-bp	pyruvate metabolic process	EnsemblGenomes	N/A	IEA
GO:0006108	GO-bp	malate metabolic process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	JGI	N/A	IEA
GO:0009507	GO-cc	chloroplast	EnsemblGenomes	N/A	IEA
GO:0004470	GO-mf	malic enzyme activity	EnsemblGenomes	N/A	IEA
GO:0004471	GO-mf	malate dehydrogenase (decarboxylating) (NAD+) activity	EnsemblGenomes	N/A	IEA
GO:0004473	GO-mf	malate dehydrogenase (decarboxylating) (NADP+) activity	EnsemblGenomes	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	EnsemblGenomes	N/A	IEA
GO:0016616	GO-mf	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	JGI	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
GO:0051287	GO-mf	NAD binding	EnsemblGenomes	N/A	IEA
GO:0051287	GO-mf	NAD binding	JGI	N/A	IEA
KOG1257	KOG	NADP+-dependent malic enzyme	JGI	N/A	IEA
PTHR23406	Panther	MALIC ENZYME-RELATED	JGI	N/A	IEA
PTHR23406:SF2	Panther	NAD-DEPENDENT MALIC ENZYME, MITOCHONDRIAL	JGI	N/A	IEA
PF00390	PFAM	Malic enzyme, N-terminal domain	JGI	N/A	IEA
PF03949	PFAM	Malic enzyme, NAD binding domain	JGI	N/A	IEA
GLUCONEO-PWY	SoyCyc9	gluconeogenesis I	Plant Metabolic Network		ISS
GN7V-52713	SoyCyc9-rxn	malate dehydrogenase (oxaloacetate-decarboxylating) (NADP⁺)	Plant Metabolic Network		ISS

Expression Patterns of Glyma.08g034300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.08g034300 not represented in the dataset	Glyma.08g034300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.08g034300

Paralog	Evidence	Comments
Glyma.05g227400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.08g034300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma08g03840	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.08g034300

Limit To All Plant Sequences

>Glyma.08g034300.2 sequence-type=transcript locus=Glyma.08g034300 ID=Glyma.08g034300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAGTACACTGAAGGCCTTGAGAGATGGAGAGTCAGTGTTGGACCTCAGCCCAAGATCCACCGTCAGTGGTGGCGTTGAGGACATCTACGGCGAGGATCGCGCCACCGAGGACCAACTTGTTATCCCATGGACTGTCTCGGTTGCCAGTGGGTACTCTTTGCTAAGGGATCCACAGTACAACAAAGGGCTAGCTTTCACTGAGAAAGAGAGGGATGCACACTATTTGCGTGGCCTCCTGCCTCCCACAGTCAGCACTCAGCAACTTCAGATTTATCTATTAATATCTATGAGGGAGAAGAAACTGATGAACAGCATCAGGCAATATCAGGTTCCCTTGCAAAAGTACGTGGCCATGATGGACCTTCAGGAGAGGAATGAAAGACTATTTTACAAACTTCTAATTGATAATGTTGAGGAATTGCTCCCTGTTAAATATGGGAGCATATTCAGACGTCCTCAGGGTCTTTACATTAGTTTGAAAGAGAGGGGTAAAATCCTCGAGGTTTTAAAAAACTGGCCTGAGAGGAGTATTCAAGTTATTGTTCTAACCGACGGTGAGTGGATTTTGGGACTTGGGGATCTTGGATGTCAGGGGATGGGAATTCCTGTTGGTAAATTGGCTTCGTACACAGCACTAGGAGGATGTTTGCCTATTACTATGGATGTGGGGACAAATAATGAGAAATTATTGAATGATGAATTTTACATTGGGCTTAGACAAAAGAGGGCAACTGGGCAGGAGTATTATGACCTTATGCATGAGTTTATGACTGCTGTGAAGCAAAACTACGGGGAAAATGTTCTTGTACAGTTTGAAGACTTTGCAAATCACAATGCTTTTGAGTTACTTGCTAAATATGGGACAACTCATCTCGTTTTCAATGACGATATACAGGGGACTGCATCTGTTGTTCTAGCTGGAGTTGTAGCAGCCCTAAAGCTCATTGGCGGTACATTGCCTGAGCACACATTCCTCTTCCTTGGTGCTGGAGAAGCAGGAACTGGTATAGCAGAGCTAATAGCTCTTGAGATGTCAAAGCAGGTGATCAAGCCAACAGTTTTGATTGGATCATTAGGAGTGGGAAGAACATTTACAAAGGAAGTAGTTGAGGCTATGACTTCAAACAATGATAAACCTCTCATTATGGCTCTCTCCAATCCTACCTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACCAGTGGAGTGAGGGTCGTGCAATTTTTGCTAGTGGGAGTCCATTTGATCCTGTTGAATACAAGGGCAAAGTTTATGCTTCTGGCCAGGCCAACAATGCTTAAATTTTCCCTGGCTTTGGTTTGGGTTTAGTAATCTCAGGAGCAATTCGAGTACATGACGATATGCTTCTAGCAGCTTCGGAATCCTTGGCTAAACAAGTGAGTGAGGAGAACTACAAAAATGGCTTGATTTACCCACCATTCTCTAATATCAGAAAAATTTCGGCTAATATAGCTGCAAATGTTGCTGCCAAGGCATACAAACTAGGCTTGGCTACCCGTCTTCCTCGTCCTCAGAATCTTGTGAAGTATGCTGAGAGTTGCATGTATACCGCAACTATAGGTGAATGAGGGCAACTCACTATTGATTCTCTCGGCTTTTGGCTCTAACAAAGATTTGTTTCGTGTAAGGCGTCTTAATTATTGTGCTTGAATAAACAATTTTATGCTTGAACCAGTGTTTTTTCTATTATGAAATCCTTATTTCATCTAATGTTACATGTGTCGATGACAATGGTTATTAAAATCCATATATAATAGCTCAAGTCGTTTCATTTGCCCTGGCGACTTTAGTTTGTTTCCAGCC

Coding sequences of Glyma.08g034300

Limit To All Plant Sequences

>Glyma.08g034300.1 sequence-type=CDS polypeptide=Glyma.08g034300.1.p locus=Glyma.08g034300 ID=Glyma.08g034300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAGTACACTGAAGGCCTTGAGAGATGGAGAGTCAGTGTTGGACCTCAGCCCAAGATCCACCGTCAGTGGTGGCGTTGAGGACATCTACGGCGAGGATCGCGCCACCGAGGACCAACTTGTTATCCCATGGACTGTCTCGGTTGCCAGTGGGTACTCTTTGCTAAGGGATCCACAGTACAACAAAGGGCTAGCTTTCACTGAGAAAGAGAGGGATGCACACTATTTGCGTGGCCTCCTGCCTCCCACAGTCAGCACTCAGCAACTTCAGATTTATCTATTAATATCTATGAGGGAGAAGAAACTGATGAACAGCATCAGGCAATATCAGGTTCCCTTGCAAAAGTACGTGGCCATGATGGACCTTCAGGAGAGGAATGAAAGACTATTTTACAAACTTCTAATTGATAATGTTGAGGAATTGCTCCCTGTTAAATATGGGAGCATATTCAGACGTCCTCAGGGTCTTTACATTAGTTTGAAAGAGAGGGGTAAAATCCTCGAGGTTTTAAAAAACTGGCCTGAGAGGAGTATTCAAGTTATTGTTCTAACCGACGGTGAGTGGATTTTGGGACTTGGGGATCTTGGATGTCAGGGGATGGGAATTCCTGTTGGTAAATTGGCTTCGTACACAGCACTAGGAGGATGTTTGCCTATTACTATGGATGTGGGGACAAATAATGAGAAATTATTGAATGATGAATTTTACATTGGGCTTAGACAAAAGAGGGCAACTGGGCAGGAGTATTATGACCTTATGCATGAGTTTATGACTGCTGTGAAGCAAAACTACGGGGAAAATGTTCTTGTACAGTTTGAAGACTTTGCAAATCACAATGCTTTTGAGTTACTTGCTAAATATGGGACAACTCATCTCGTTTTCAATGACGATATACAGGGGACTGCATCTGTTGTTCTAGCTGGAGTTGTAGCAGCCCTAAAGCTCATTGGCGGTACATTGCCTGAGCACACATTCCTCTTCCTTGGTGCTGGAGAAGCAGGAACTGGTATAGCAGAGCTAATAGCTCTTGAGATGTCAAAGCAGACTAAGGCACCCATAGAAGAGACTCGCAAGAAGATATGGCTTGTAGACTCAAAGCCTGTTAACAGTCTCCTAGAGGCAGTCAAGGTGATCAAGCCAACAGTTTTGATTGGATCATTAGGAGTGGGAAGAACATTTACAAAGGAAGTAGTTGAGGCTATGACTTCAAACAATGATAAACCTCTCATTATGGCTCTCTCCAATCCTACCTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACCAGTGGAGTGAGGGTCGTGCAATTTTTGCTAGTGGGAGTCCATTTGATCCTGTTGAATACAAGGGCAAAGTTTATGCTTCTGGCCAGCATAACATCATATCTGATTCTTTCCTTGTTAATTCAGGCCAACAATGCTTAAATTTTCCCTGGCTTTGGTTTGGGTTTAGTAATCTCAGGAGCAATTCGACGGAATCCTTGGCTAAACAAGTGAGTGAGGAGAACTACAAAAATGGCTTGATTTACCCACCATTCTCTAATATCAGAAAAATTTCGGCTAATATAGCTGCAAATGTTGCTGCCAAGGCATACAAACTAGGCTTGGCTACCCGTCTTCCTCGTCCTCAGAATCTTGTGAAGTATGCTGAGAGTTGCATGTATACCGCAACTATAGGTGAATGA

>Glyma.08g034300.2 sequence-type=CDS polypeptide=Glyma.08g034300.2.p locus=Glyma.08g034300 ID=Glyma.08g034300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAGTACACTGAAGGCCTTGAGAGATGGAGAGTCAGTGTTGGACCTCAGCCCAAGATCCACCGTCAGTGGTGGCGTTGAGGACATCTACGGCGAGGATCGCGCCACCGAGGACCAACTTGTTATCCCATGGACTGTCTCGGTTGCCAGTGGGTACTCTTTGCTAAGGGATCCACAGTACAACAAAGGGCTAGCTTTCACTGAGAAAGAGAGGGATGCACACTATTTGCGTGGCCTCCTGCCTCCCACAGTCAGCACTCAGCAACTTCAGATTTATCTATTAATATCTATGAGGGAGAAGAAACTGATGAACAGCATCAGGCAATATCAGGTTCCCTTGCAAAAGTACGTGGCCATGATGGACCTTCAGGAGAGGAATGAAAGACTATTTTACAAACTTCTAATTGATAATGTTGAGGAATTGCTCCCTGTTAAATATGGGAGCATATTCAGACGTCCTCAGGGTCTTTACATTAGTTTGAAAGAGAGGGGTAAAATCCTCGAGGTTTTAAAAAACTGGCCTGAGAGGAGTATTCAAGTTATTGTTCTAACCGACGGTGAGTGGATTTTGGGACTTGGGGATCTTGGATGTCAGGGGATGGGAATTCCTGTTGGTAAATTGGCTTCGTACACAGCACTAGGAGGATGTTTGCCTATTACTATGGATGTGGGGACAAATAATGAGAAATTATTGAATGATGAATTTTACATTGGGCTTAGACAAAAGAGGGCAACTGGGCAGGAGTATTATGACCTTATGCATGAGTTTATGACTGCTGTGAAGCAAAACTACGGGGAAAATGTTCTTGTACAGTTTGAAGACTTTGCAAATCACAATGCTTTTGAGTTACTTGCTAAATATGGGACAACTCATCTCGTTTTCAATGACGATATACAGGGGACTGCATCTGTTGTTCTAGCTGGAGTTGTAGCAGCCCTAAAGCTCATTGGCGGTACATTGCCTGAGCACACATTCCTCTTCCTTGGTGCTGGAGAAGCAGGAACTGGTATAGCAGAGCTAATAGCTCTTGAGATGTCAAAGCAGGTGATCAAGCCAACAGTTTTGATTGGATCATTAGGAGTGGGAAGAACATTTACAAAGGAAGTAGTTGAGGCTATGACTTCAAACAATGATAAACCTCTCATTATGGCTCTCTCCAATCCTACCTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACCAGTGGAGTGAGGGTCGTGCAATTTTTGCTAGTGGGAGTCCATTTGATCCTGTTGAATACAAGGGCAAAGTTTATGCTTCTGGCCAGGCCAACAATGCTTAA

Predicted protein sequences of Glyma.08g034300

Limit To All Plant Sequences

>Glyma.08g034300.1.p sequence-type=predicted peptide transcript=Glyma.08g034300.1 locus=Glyma.08g034300 ID=Glyma.08g034300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MESTLKALRDGESVLDLSPRSTVSGGVEDIYGEDRATEDQLVIPWTVSVASGYSLLRDPQYNKGLAFTEKERDAHYLRGLLPPTVSTQQLQIYLLISMREKKLMNSIRQYQVPLQKYVAMMDLQERNERLFYKLLIDNVEELLPVKYGSIFRRPQGLYISLKERGKILEVLKNWPERSIQVIVLTDGEWILGLGDLGCQGMGIPVGKLASYTALGGCLPITMDVGTNNEKLLNDEFYIGLRQKRATGQEYYDLMHEFMTAVKQNYGENVLVQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLPEHTFLFLGAGEAGTGIAELIALEMSKQTKAPIEETRKKIWLVDSKPVNSLLEAVKVIKPTVLIGSLGVGRTFTKEVVEAMTSNNDKPLIMALSNPTSQSECTAEEAYQWSEGRAIFASGSPFDPVEYKGKVYASGQHNIISDSFLVNSGQQCLNFPWLWFGFSNLRSNSTESLAKQVSEENYKNGLIYPPFSNIRKISANIAANVAAKAYKLGLATRLPRPQNLVKYAESCMYTATIGE*

>Glyma.08g034300.2.p sequence-type=predicted peptide transcript=Glyma.08g034300.2 locus=Glyma.08g034300 ID=Glyma.08g034300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MESTLKALRDGESVLDLSPRSTVSGGVEDIYGEDRATEDQLVIPWTVSVASGYSLLRDPQYNKGLAFTEKERDAHYLRGLLPPTVSTQQLQIYLLISMREKKLMNSIRQYQVPLQKYVAMMDLQERNERLFYKLLIDNVEELLPVKYGSIFRRPQGLYISLKERGKILEVLKNWPERSIQVIVLTDGEWILGLGDLGCQGMGIPVGKLASYTALGGCLPITMDVGTNNEKLLNDEFYIGLRQKRATGQEYYDLMHEFMTAVKQNYGENVLVQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLPEHTFLFLGAGEAGTGIAELIALEMSKQVIKPTVLIGSLGVGRTFTKEVVEAMTSNNDKPLIMALSNPTSQSECTAEEAYQWSEGRAIFASGSPFDPVEYKGKVYASGQANNA*

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